 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01001297G0270 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
C3H |
| Protein Properties |
Length: 302aa MW: 31359.8 Da PI: 10.2803 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01001297G0270 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.5 | 7.5e-06 | 103 | 128 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + C G++C+FaHg+
PH01001297G0270 103 KTRMCNKYNTAEGCTWGNKCHFAHGE 128
89**********************96 PP
|
| 2 | zf-CCCH | 37 | 5.8e-12 | 267 | 292 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +GdrC+FaHg+
PH01001297G0270 267 FKTKLCENFNK-GSCTFGDRCRFAHGE 292
69*********.*************96 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 46 | 61 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 7.385 | 50 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-13 | 99 | 133 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-8 | 100 | 132 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.07 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.1 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 2.0E-11 | 171 | 241 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 9.4E-16 | 171 | 240 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.802 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 9.6E-12 | 174 | 238 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 8.50E-14 | 174 | 237 | No hit | No description |
| SuperFamily | SSF54791 | 4.24E-15 | 174 | 268 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 8.8E-17 | 264 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.11E-9 | 266 | 297 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.685 | 266 | 293 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.0E-8 | 266 | 292 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-9 | 267 | 292 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MDAGRKRGAP EGANGAGAGG GAKRARGSVL TTNLQYYVKL EIPLANTAGC PFGASCHFLH 60
NFPGGYQAVA KMTNLGGLAI AAPPGRMPMG RVVPDGPPTS TVKTRMCNKY NTAEGCTWGN 120
KCHFAHGERE LGKPMRLNNS MAPPMAPRPN GHFEPLPMPG PDMVPSSTFG ASATAKISVD 180
ASLAGAIIGK GGANTKHISR MTGAKLAIRD NEGDPNLKNI ELEGTFDQIK HASTMVKELI 240
VRIGGNAPPS AKNPARGSHA GGPGSNFKTK LCENFNKGSC TFGDRCRFAH GESELRKPAA 300
A*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP091480 | 0.0 | FP091480.1 Phyllostachys edulis cDNA clone: bphyem209p22, full insert sequence. |
