PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001260G0280

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 1402aa MW: 152563 Da PI: 7.9793

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001260G0280	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.5	4.4e-17	1185	1231	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq PH01001260G0280 1185 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 1231 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57756	4.92E-5	346	390	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	4.0E-5	347	390	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	0.44	348	364	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	0.44	375	391	IPR001878	Zinc finger, CCHC-type
SuperFamily	SSF56219	1.25E-9	600	712	IPR005135	Endonuclease/exonuclease/phosphatase
PROSITE profile	PS50878	13.242	676	939	IPR000477	Reverse transcriptase domain
CDD	cd01650	4.37E-39	705	939	No hit	No description
Pfam	PF00078	1.6E-28	710	939	IPR000477	Reverse transcriptase domain
SuperFamily	SSF56672	1.33E-17	712	910	No hit	No description
CDD	cd00083	2.87E-17	1176	1235	No hit	No description
SuperFamily	SSF47459	2.88E-20	1178	1246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.635	1181	1230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-20	1185	1236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-14	1185	1231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-18	1187	1236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1402 aa Download sequence Send to blast
MASIASFFAM VMACALLASN TCHAARHLAD TTTAAAPPAA AAVPGLPAVP TLPTLPPMPA 60 VPTVTVPQVT LPPMPAVPSV PKVALPPMPA VPSVDGDSSE NEEDEATAVY SDVRATGYSE 120 EEACQAAGLV QARSKPKIQR SVQILNQVGS QAEPSKPKIQ RSAQILNQVG LPSPGFIAQS 180 RLPIRPIPCQ RQGWQTRQFW GRQEQRWPGT VEPRPGSYGG VVGNAGAGRG LPQTGGNADF 240 INKSGTNAGH LGSASGTALQ GAAGHHGQVP TPSVGGLAYR GPGGQIGVAR VVVDGTVGMA 300 TTLPAGAATV AGSETSAPMV VSSHSGGPYV IHHVQLGKDG GADKITRFCF GCKEKGHTIV 360 VCPVVLHGAD KITRFCFGCK EKGHTIVVCP VVLHGDICEY TNHLAPRCPL LKLPKPVANF 420 CGYGAEGLGF YMVPSTGPSR LRDEQGTLGW YGLLVGVIDV SLIPVSVDIV VGHNVYELFF 480 KVEQDSDGNM GEGNVGDEQN NRGRKDKGGD EEEEMKDREM MDRDAKGAKN VSAATETTSS 540 GIISSSQEPR WSRRLASKVG ADEDSLLKAV RRAKYKNLEE NKDEVAISNL NQGDFFIKLH 600 LRNKEDGFQW ILVAVYGVAQ PTYKDNFLTG LVHACSKETL PILIGGNFNI IRRSEKKNNY 660 NVDRHYPFLF NAVIESLELR EFRLSGRQFT WANNVDNPTY EKLDRILVGA NRLMGIAQKV 720 GRPSQTTFML GRNIMKGVVV LHETIHELHK KKLDGIIFKI DFEKAYDKVK WPFLQQTLRM 780 KGFSPSWCAW IKIFVARGSV GVKINDSIGP YFQTKKGLRQ GDPLSPILFN IVADMLAIVI 840 GRAKNEGPVS GIIPHLVDDG LSILQYSDDT ILFMDHNFDQ AKNLKFILCA FEQLSGLKIN 900 FHKSELFCFG AAKKIESHYL DIFGYERGCF PFKYLGIPIH FRRLQNNEWI GLEDRFEKRL 960 SNWKGKILLV VDCTDNNLVE LLWHNGSVVA QSQTHQRAPS DRGQSTSGLT GEESAAWFPD 1020 TLDDALEKDL YTQLWHSIAS ATPDGGMFPG PGSHPPPDFA HPARPPMRSG IGSSWTGDIC 1080 STFCGSNQVP EVPVEGGEGN AALRSEVMRG ASTHEGAGTS SSGGSGNNFG GSGLPSESAH 1140 AHKRKGRGRD DSDSRSEDVE CEATEETKSS SRRYASKRRS RAAEVHNLSE RRRRDRINEK 1200 MRALQELIPH CNKTDKASIL DEAIEYLKSL QMQVQVWNNC FIYLNSHNPN GINYWYQLRL 1260 SNLPQIMWMT TGMAPMMFPR AHQFMPLMTV GMNSACMPAA QGLNQMPRVP YMNHSLPNHI 1320 PMNSSPFINP LNVANQMQNI KLREASNHYL HPDDGQTAAP QVSGLYAYGP QVAQQNQIPE 1380 VPTSTAVPTS GAGQPPTSDG V*

Sequence ? help Back to Top

Protein Sequence Length: 1402 aa Download sequence Send to blast

MASIASFFAM VMACALLASN TCHAARHLAD TTTAAAPPAA AAVPGLPAVP TLPTLPPMPA  60
VPTVTVPQVT LPPMPAVPSV PKVALPPMPA VPSVDGDSSE NEEDEATAVY SDVRATGYSE  120
EEACQAAGLV QARSKPKIQR SVQILNQVGS QAEPSKPKIQ RSAQILNQVG LPSPGFIAQS  180
RLPIRPIPCQ RQGWQTRQFW GRQEQRWPGT VEPRPGSYGG VVGNAGAGRG LPQTGGNADF  240
INKSGTNAGH LGSASGTALQ GAAGHHGQVP TPSVGGLAYR GPGGQIGVAR VVVDGTVGMA  300
TTLPAGAATV AGSETSAPMV VSSHSGGPYV IHHVQLGKDG GADKITRFCF GCKEKGHTIV  360
VCPVVLHGAD KITRFCFGCK EKGHTIVVCP VVLHGDICEY TNHLAPRCPL LKLPKPVANF  420
CGYGAEGLGF YMVPSTGPSR LRDEQGTLGW YGLLVGVIDV SLIPVSVDIV VGHNVYELFF  480
KVEQDSDGNM GEGNVGDEQN NRGRKDKGGD EEEEMKDREM MDRDAKGAKN VSAATETTSS  540
GIISSSQEPR WSRRLASKVG ADEDSLLKAV RRAKYKNLEE NKDEVAISNL NQGDFFIKLH  600
LRNKEDGFQW ILVAVYGVAQ PTYKDNFLTG LVHACSKETL PILIGGNFNI IRRSEKKNNY  660
NVDRHYPFLF NAVIESLELR EFRLSGRQFT WANNVDNPTY EKLDRILVGA NRLMGIAQKV  720
GRPSQTTFML GRNIMKGVVV LHETIHELHK KKLDGIIFKI DFEKAYDKVK WPFLQQTLRM  780
KGFSPSWCAW IKIFVARGSV GVKINDSIGP YFQTKKGLRQ GDPLSPILFN IVADMLAIVI  840
GRAKNEGPVS GIIPHLVDDG LSILQYSDDT ILFMDHNFDQ AKNLKFILCA FEQLSGLKIN  900
FHKSELFCFG AAKKIESHYL DIFGYERGCF PFKYLGIPIH FRRLQNNEWI GLEDRFEKRL  960
SNWKGKILLV VDCTDNNLVE LLWHNGSVVA QSQTHQRAPS DRGQSTSGLT GEESAAWFPD  1020
TLDDALEKDL YTQLWHSIAS ATPDGGMFPG PGSHPPPDFA HPARPPMRSG IGSSWTGDIC  1080
STFCGSNQVP EVPVEGGEGN AALRSEVMRG ASTHEGAGTS SSGGSGNNFG GSGLPSESAH  1140
AHKRKGRGRD DSDSRSEDVE CEATEETKSS SRRYASKRRS RAAEVHNLSE RRRRDRINEK  1200
MRALQELIPH CNKTDKASIL DEAIEYLKSL QMQVQVWNNC FIYLNSHNPN GINYWYQLRL  1260
SNLPQIMWMT TGMAPMMFPR AHQFMPLMTV GMNSACMPAA QGLNQMPRVP YMNHSLPNHI  1320
PMNSSPFINP LNVANQMQNI KLREASNHYL HPDDGQTAAP QVSGLYAYGP QVAQQNQIPE  1380
VPTSTAVPTS GAGQPPTSDG V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	651	657	RRSEKKN
2	1176	1193	KRRSRAAEVHNLSERRRR
3	1189	1194	ERRRRD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001260G0280

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-24	phytochrome interacting factor 3