PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001249G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 312aa    MW: 33424 Da    PI: 4.871
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001249G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.5e-304107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+   ++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q +q
  PH01001249G0310   4 SCNGCRVLRKGCSEGCTIRPCLqwietPQAQANATVFLAKFYGRAGLLNLLAGGTDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQACQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l ++
  PH01001249G0310  98 AAVEAVLKGN 107
                      ****998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6153109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLQWIET PQAQANATVF LAKFYGRAGL LNLLAGGTDH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGNRIV QVSSEAVAAA  120
QATPPLRAYD IRHVAGAKDP DAGAAADLLH VARAGRTRFK RASSSTSKPK GAGAKRATPT  180
PRQEPEPEPV VVGEHDDDRD RAPNHEESAG SHDHDHDRVE DDDTAIEEAQ EGSEDTEVEA  240
GSHVSQAEQQ SPVPVAEEDE EGEDEVGLEL TLGFEPVARV SRTPRPSAEA RCDLSSLSAE  300
SSHIGLRLEL PA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001249G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005030.0FP100503.1 Phyllostachys edulis cDNA clone: bphyst018k16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310952.11e-139LOB domain-containing protein 42
TrEMBLI1IL931e-137I1IL93_BRADI; Uncharacterized protein
STRINGBRADI4G16750.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-61LOB domain-containing protein 41