PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001155G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 348aa    MW: 38527.2 Da    PI: 9.6111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001155G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-131341741055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RRdriN+++ +L++l+P++      K +Ka++L +A++Y+k+Lq
  PH01001155G0390 134 QKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEAIDYLKQLQ 174
                      79******************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15134196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-14134182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.65E-14134177No hitNo description
PfamPF000101.1E-10134174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNQCVPSWDL DDQVGAAGLK PASAGAHRVV SGAGAFTPVI VPMSDQYYEV AELTWAKGNI  60
SSHGRLNRPR DGLCDEGDNV VIKGKAAMRS SNVNKRSRAA TIHNESERDK FHIAITIQDN  120
FSDIAVKAES PSYQKRRDRI NQKMKTLQKL VPNSSKTDKA SMLDEAIDYL KQLQAQVLVM  180
SRMSGMMMPM AMPQLQMSVM ANMAQMAQMA QMGLGMMNMG TLAQPGYAGL TPPMNMMHPS  240
PPFVPMSWDA ADRPQQPAGS AAPDAFSAFL ACQAAQQNAQ YFLEDVLPQT CMTYASNFLF  300
KRRVKLTNWQ KFLQQQQPNS MEAYNRMVAL YQKLNQQQQS QPSNSKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001155G0390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614202e-84AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678142e-84AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697075.13e-72PREDICTED: transcription factor UNE10-like
TrEMBLA0A0D9XMB31e-72A0A0D9XMB3_9ORYZ; Uncharacterized protein
STRINGLPERR10G14070.12e-73(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-23bHLH family protein