PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001131G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 190aa    MW: 20659.9 Da    PI: 7.0949
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001131G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.4e-3194152159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYG+K vk+s++pr+YYrC+++gC vkk+ver+++dp++v++tY g Hnh 
  PH01001131G0560  94 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCGVKKRVERDRDDPRYVITTYDGAHNHA 152
                      59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-3382154IPR003657WRKY domain
SuperFamilySSF1182901.07E-2786154IPR003657WRKY domain
PROSITE profilePS5081131.9589154IPR003657WRKY domain
SMARTSM007742.5E-3594153IPR003657WRKY domain
PfamPF031061.1E-2495151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAASLGLNPE AFFSCYPYSS PFLADYAPNS PATGAADLSA ELDGHHPFEY SPAPIFAGAG  60
DDHHEKAMSC ESEEKRMRVN GRIGFRTRSE VEILDDGFKW RKYGKKAVKN SPNPRNYYRC  120
STEGCGVKKR VERDRDDPRY VITTYDGAHN HATPCSGAAA AVLQYAGNYY SPPSSAGSPP  180
AAYSAGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2880154377Probable WRKY transcription factor 4
2lex_A3e-2880154377Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001131G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0956690.0FP095669.1 Phyllostachys edulis cDNA clone: bphyem102i05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.12e-80probable WRKY transcription factor 50
TrEMBLA0A139Z8851e-117A0A139Z885_BAMEM; Transcription factor WRKY1
STRINGLPERR05G04920.14e-81(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-42WRKY DNA-binding protein 50