PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001123G0500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 778aa MW: 85659.6 Da PI: 8.193 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.9e-20 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g PH01001123G0500 109 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 158 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-31 | 108 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-32 | 109 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 109 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 109 | 168 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-36 | 109 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-14 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF03108 | 2.8E-5 | 503 | 533 | IPR004332 | Transposase, MuDR, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MAAAIDLSGE ELIRALEPFI RDASAPHVSH LSPTSPFSFP HAEYRGYPYG VQAQAQAQAQ 60 AELSPAQMHY IQARLHQRQT AQSVLGPRVH PMKAASSAAA ATPPRPQKLY RGVRQRHWGK 120 WVAEIRLPRN RTRLWLGTFD TAEEAALAYD QAAYRLRGDA ARLNFPHNAA SRGPLHASVD 180 AKLQALCQNI AASKNAKKSA SASAAATSST PSSNCSSPSS DEASSCLESA IAHPRHSRDG 240 DGAGDAAAGL QRGAVGRGRR LRPHQISDLF SCSSRFVVAR VGFLPESRFL NLRIEAELGV 300 CTISRFRDAD LVLVFFVGTH IGHPCAVEMN ILDKLVVRFH LNEEFINDGK VLHYCEGSER 360 LFYIERDKIS LPEITRHLGD HYEVLQGMLL HWLFPGKELV NGMRALVDDK ACQVMSNYVS 420 EGEIADIYVE TMPVEGESEE DDENGREDID FEEEINALTP DEESEDDDQL HDDEDSFSKE 480 GSDGATVRKK SIYPRFDSKA KVPNFSLGMK FRSKKQFKSA MIKYALAQRK DIQIGDGDGW 540 VIISNQQKGF LNAIVHWVPI AEHRMYWQLS GLPCCHAISC IFFGSKSVED FIDNCYSVEE 600 FNKTYEHCLQ PVDGMSVWPV SNKPKPKAPG YVKMPADNLS STHGMVTRGS QQSSTNLGKR 660 KTPAGTTNAS NSKRKCSGIE VLFSKRTGTI IQNPGMLNQR IIGASTKAKV TTKEGGSASC 720 TLNDRVPTSQ ANSRVTISLS SQASRSAIVH AQEPLRKSKE PTQKKSTNHV PHLLRPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 108 | 166 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001123G0500 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095559 | 0.0 | FP095559.1 Phyllostachys edulis cDNA clone: bphylf038p14, full insert sequence. | |||
GenBank | FP099575 | 0.0 | FP099575.1 Phyllostachys edulis cDNA clone: bphylf046e12, full insert sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 3e-36 | ERF family protein |