PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MIKC_MADS

Protein Properties

Length: 301aa MW: 34146.1 Da PI: 9.522

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001113G0580	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.4	3.4e-22	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y PH01001113G0580 9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHY 57 79*********************************************99 PP
2	K-box	29	4.4e-11	73	167	2	96
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++++++++++ ++ el+k+ k e L++e+R + +d e+ ++ L+ Le++Le ++ k+Rs K+ + +i++l + + qee L PH01001113G0580 73 EAATHTKVWADIRQERLAELEKVGKMCELLEKELRFMAVDDGEQYTVPSLEALEHNLEVAMHKVRSEKDSKIGGEISYLENVIRGRQEERYGLC 166 66778889***********************************************************************999998888887775 PP K-box 96 k 96 PH01001113G0580 167 D 167 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.796	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.6E-30	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-26	2	87	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-22	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-22	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.6E-12	85	169	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	9.825	85	175	IPR002487	Transcription factor, K-box
SuperFamily	SSF52080	1.83E-16	205	289	IPR021131	Ribosomal protein L18e/L15P
Pfam	PF00828	1.2E-4	227	289	IPR021131	Ribosomal protein L18e/L15P

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGKGRSEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYHYLAP 60 TVPSVKEFVE RYEAATHTKV WADIRQERLA ELEKVGKMCE LLEKELRFMA VDDGEQYTVP 120 SLEALEHNLE VAMHKVRSEK DSKIGGEISY LENVIRGRQE ERYGLCDELA HAQTLKDVEG 180 GSSSLSNGLE LKLGKSAAAV RTRFKKNRKK RDHMSAGHDR IGKHREHPGG RGNAGGMHHH 240 RILFDKYFLG YFDKVGMRYF HKLHNRFHCP VVNVEMLWSM VPAEKAAEAG ADKAPLVDVT 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4v3p_LO	4e-48	202	300	3	99	60S ribosomal protein L27a-3
4v7e_Ca	4e-48	202	300	3	99	60S ribosomal protein L15
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001113G0580

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469314	0.0	KF469314.1 Brachypodium distachyon MADS-box transcription factor 19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644649.1	1e-122	PREDICTED: MADS-box transcription factor 32 isoform X1
Refseq	XP_015693732.1	1e-122	PREDICTED: MADS-box transcription factor 32 isoform X2
Swissprot	Q8S151	1e-122	MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBL	A0A3Q8BCB5	1e-124	A0A3Q8BCB5_DENLA; MADS32
STRING	OB01G38450.1	1e-121	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11923	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-20	MIKC_MADS family protein

Publications ? help Back to Top
Wang H, et al. OsMADS32 interacts with PI-like proteins and regulates rice flower development. J Integr Plant Biol, 2015. 57(5): p. 504-13 [PMID:25081486] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]