PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001110G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 312aa    MW: 34610.5 Da    PI: 9.1001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001110G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.6e-1069104532
                      HHHHHHHHHHHHHHHHHHHHCTSCCC.......... CS
              HLH   5 hnerErrRRdriNsafeeLrellPkas........k 32 
                      h+e+ErrRR+riN  +++Lr+++P a          
  PH01001110G0250  69 HSEAERRRRERINAHLATLRRMIPDAKqvcknspgL 104
                      9************************75455555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-105596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.40564141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1068144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-769119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-670147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-10123148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.17E-6180241No hitNo description
Gene3DG3DSA:3.30.70.2602.6E-5181231No hitNo description
PROSITE profilePS5167110.08183260IPR002912ACT domain
CDDcd048731.39E-7185252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MATCQPFVAG EQQQQQEQHL HDGGCALPSV YRGTVLLPRQ ASLAPPPTAL ELSSSSGRSA  60
TEERALKIHS EAERRRRERI NAHLATLRRM IPDAKQVCKN SPGLVVSEFL FMQNIYSQVT  120
YAVLTDKATL LARVVNQVKD LKRKATEVTQ AMPIPPEANE VTVQCYTEHG RNATGDDRST  180
YIRASVSCDD RPNLFADITR AFHGLGLRAL RADMTSLGGR TQHIFVLCKE EGNVSVSLKF  240
LKENVRQALA KVAFPEMVYS SSSRSKREDF RVKLLNSHVL HVFPEETDVP GPNWEVQKCG  300
TLKPCKLQNG T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001110G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.16e-86putative transcription factor bHLH107
TrEMBLA0A0D9UX255e-86A0A0D9UX25_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Y3K36e-86A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G04250.11e-86(Oryza glumipatula)
STRINGLPERR01G03590.19e-87(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-23bHLH family protein