PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001091G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BBR-BPC
Protein Properties Length: 383aa    MW: 42280.5 Da    PI: 10.4092
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001091G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind48.24.4e-1511391113
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki........rernlalsekkaavaerd......................maflq 62 
                      mdddgs   rn+g++e     ++nlglqlmss++ +rd+k+        +++ +  + ++  +++rd                      m+f++
  PH01001091G0310   1 MDDDGSLGiRNWGFFETP---ARNLGLQLMSSVPaDRDTKQllsnspflHHHGHQHMPHHPHHHPRDggvgggapsgiagmpaeapsmpMNFVR 91 
                      9*****999*******99...78**********99******88888888444444566667778999*************************** PP

        GAGA_bind  63 rdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq 113
                      +d +++    ++++rd+k+l+ l ++   +++l +     +++k++++l+ 
  PH01001091G0310  92 NDLWMHP---THHPRDSKMLHTLNADPRESKMLHTLNVDPRESKMLHTLNV 139
                      *******...99********9998776665444444444455555555555 PP
2GAGA_bind313.66.5e-9615138273301
        GAGA_bind  73 alverdnkllalllvensla.....salpvgvq.vlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160
                      +  +r++k+l  l++ ++       +++p+g++ +++gt+s+++lq++++p+ ++++   +++e+++ + iee++ +++e + +kkrq+ ++pk
  PH01001091G0310 151 HADPRESKMLCTLTAGHAGHvahaaHHEPAGYGmMIPGTHSAHTLQMMQQPEPQPPPP--PKQECMSPPLIEENVGVINEPPPPKKRQQRRQPK 242
                      5567899999888888877677888999999873589**********77766655555..599******************************* PP

        GAGA_bind 161 ekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254
                      ++k kk+kk  ++++++ ++++  +r++ +kk++++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCttt+S+yPLP+stkrrgaR
  PH01001091G0310 243 SPKPKKPKK-VAATREDRQPNGPAPRRRVPKKTVGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTVSTYPLPMSTKRRGAR 335
                      *********.55777777777777********************************************************************** PP

        GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      iagrKmSqgafkk+LekLa+eGy+l+np+DLk+ WAkHGtnkfvtir
  PH01001091G0310 336 IAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTLWAKHGTNKFVTIR 382
                      **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.9E-1151382IPR010409GAGA-binding transcriptional activator
SMARTSM012265.8E-1741382IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDDDGSLGIR NWGFFETPAR NLGLQLMSSV PADRDTKQLL SNSPFLHHHG HQHMPHHPHH  60
HPRDGGVGGG APSGIAGMPA EAPSMPMNFV RNDLWMHPTH HPRDSKMLHT LNADPRESKM  120
LHTLNVDPRE SKMLHTLNVD PHESKMLHTL HADPRESKML CTLTAGHAGH VAHAAHHEPA  180
GYGMMIPGTH SAHTLQMMQQ PEPQPPPPPK QECMSPPLIE ENVGVINEPP PPKKRQQRRQ  240
PKSPKPKKPK KVAATREDRQ PNGPAPRRRV PKKTVGMVIN GIDLDLSRIP TPVCSCTGAP  300
QQCYRWGAGG WQSACCTTTV STYPLPMSTK RRGARIAGRK MSQGAFKKVL EKLAGEGYNL  360
NNPIDLKTLW AKHGTNKFVT IR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245251PKKPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001091G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573749.11e-141barley B recombinant-like protein A
SwissprotP0DH881e-136BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-136BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0E0KCJ01e-144A0A0E0KCJ0_ORYPU; Uncharacterized protein
STRINGOPUNC03G13410.11e-145(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-62basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]