PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001051G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 628aa    MW: 67042.2 Da    PI: 6.6373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001051G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09290337455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+++Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  PH01001051G0170 290 SHSIAERARREKIGHRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 337
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-16284355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-8284341No hitNo description
PROSITE profilePS5088814.881286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16288354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6290337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-10292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MNCGPPNQLP PATAPSCFLN LNWDQSMDAA AAGGHLDPAL SSMVSSPASN STAAASTEGL  60
ALHGISPQPH YGGTPLSSPP KLNLSMMSQF HHYQPPQVGG AGAGGLPILE NLLPMGPLDQ  120
FLADSGFAER AARLSGFDAR GSGGGYGSAA PVQFGLPDAG PVGALKELEL GNARDESSVS  180
DPASASAEMA LKRPSEGNAR KRKAGGKGKG KDGPMSTSAK DLTMEDSSAK RCKSTEESND  240
AEENSAKGKA AQSNSENGVK KQGKDSTSKP PEPPKDYIHV RARRGEATDS HSIAERARRE  300
KIGHRMKLLQ DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNNLP  360
NLLPKDMHQS CGPLQNSHFP LETSGAPLPY INQPHQGNPL GCGLTNGMEN QGSMHPLDPA  420
FYRPMGSHHP FLNGVSDAAS QVGAFWQDDL QSVVQMDMGQ NQEIATSSDS YNGTMHLTSK  480
IVLVMKSRHC ISQTRSWFCH EQTLGAFIFF SRGETLDTVR FGAACIAQEW AYLIALVIRH  540
YQSWDWSNHV VMPMLVDFLY FSRSIAMLSS SRAYTYSAAC ASTAAAAAPD DVNDDKGRPG  600
RGVESDGVWS DGNPTIARPF QFALGPF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001051G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
GenBankHQ8588640.0HQ858864.1 Oryza sativa Japonica Group isolate UT1673 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645221.10.0PREDICTED: transcription factor bHLH77 isoform X2
TrEMBLA0A0A9QTY70.0A0A0A9QTY7_ARUDO; Uncharacterized protein
STRINGOPUNC01G40520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-58bHLH family protein