PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001028G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 300aa    MW: 32916 Da    PI: 8.8161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001028G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06828323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++Cgk F+r  nL+ H r H
  PH01001028G0270  8 CEICGKGFKRDQNLQLHRRGH 28
                     *******************88 PP
2zf-C2H210.90.0014113131523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg+ Fsr++++ +H   +
  PH01001028G0270 113 DCGTIFSRRDSFITHRAFC 131
                      9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.34E-8528No hitNo description
Gene3DG3DSA:3.30.160.609.8E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.51628IPR007087Zinc finger, C2H2
SMARTSM003550.036628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.34E-878103No hitNo description
SMARTSM0035516083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFKRDQN LQLHRRGHNL PWKLKQRGSQ DAVRKRVYIC PEASCVHHDP  60
SRALGDLTGI KKHFFRKHGE KKWKCDKCSK KYAVHSDWKA HSKICGTREY KCDCGTIFSR  120
RDSFITHRAF CDALTVESAK AGGLPVMATE AQGHHPLLFS PPPTHQVMLH RELAALQDHH  180
QEVMQPPPQQ DGNVLDPAGV MGFARTASHG RSGDDGGGGG AAGGGGDGMT RDFLGLRAFS  240
HRDILGFAGF DSSCMGGVNA ATNTSMGCYE PQQHGQAQAQ AQHQQQSSNE PWHDMGRHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-3479145369Zinc finger protein JACKDAW
5b3h_F8e-3479145369Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001028G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0094530.0BT009453.1 Triticum aestivum clone wlmk8.pk0027.b6:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.11e-110protein indeterminate-domain 7
TrEMBLA0A0E0JKB61e-139A0A0E0JKB6_ORYPU; Uncharacterized protein
STRINGOPUNC01G20510.11e-139(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.12e-80indeterminate(ID)-domain 7