PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001028G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 750aa    MW: 81383.8 Da    PI: 6.4164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001028G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.5e-06460482225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C +far G C  Gd C++ H
  PH01001028G0210 460 KSKPCTHFAR-GSCLKGDDCPYDH 482
                      6789******.************* PP
2zf-CCCH28.13.4e-09488509526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  PH01001028G0210 488 PCHNFLENGMCVRGDKCKFSHV 509
                      7********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.939429456IPR000571Zinc finger, CCCH-type
SMARTSM003560.27430455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6430454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4457482IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5458484IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028458485IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5460483IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016486510IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6487512IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4488508IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249488511IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5488509IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MEDVLAPHTA PPGTLSALSA VVLTRRRSHL DSASYSTLSR LFSHFLHIHP SLHAAPAHPE  60
VEPAAANTIG DPGEPPQGGS ATPKDAEFDR GKDVEEEGAV GNPIPHETLA PSGVQAAAAN  120
PIADPGVAPQ GSREREVAGV ERVESVQEMV VAASTCGKTG AFVEEMRSGA GLVGEDEAFR  180
SMKACLERED EQPVEVAVGN DNEQLLFDAM MTNFSGLIDD ISGGTMSVQS CGFPGGDLQN  240
DGKAAEEVKE LGGRIEEDRP VGNSDLGSAD GGGFEEGEIE GDMQDLDADE PGNSELEDED  300
ADDERLEEDF VSKGSGENES CDNDTQNRNL HSTPKTKGNS DLVLYKEGNI KDDAQMPVAR  360
ARAVSYDKAV DWNEALLPDD ETTKPGKKRK RHLTEERKAK KTKNKRVKRA QQRIAEGVKR  420
LKLQPVIKPK VVQYCRFYLH GKCQKGNICK FSHDTTPLTK SKPCTHFARG SCLKGDDCPY  480
DHELLKYPCH NFLENGMCVR GDKCKFSHVM PTAEGASTPD AKKSDAPLVS EKANQREQTS  540
GQKTSTVYNG EPVTSAPTKH YSILKNLANI SINAQKTSAH IPKGVQFLAF SKDRSGSSIL  600
HQDALSTEKH RYTNGGQHHN FGGPQAAEGK NIVKQNGQRS APLLDEKSLS KEATLHPCSE  660
SKKTSLPTNF TAVPGSNLAK IYCGFMKSYY LSWAVTGPTG GDHPKQRGRS NRWCPPEAKG  720
IRPEDLRRMR QLLGESKKEI PLQIRHPIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001028G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184316.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184317.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184318.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184319.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184320.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A3B6GT470.0A0A3B6GT47_WHEAT; Uncharacterized protein
STRINGEMT283410.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-06C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]