PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001018G0530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 500aa    MW: 55333.3 Da    PI: 5.0948
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001018G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.13.5e-30301352101
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.....XTTSEEEEESXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.....kekiweFkhksFkkg 89 
                      Fl k+ye+++d++++ ++sws ++  sfvv+++ ef+ ++Lp+yFkhsnf+SF+RQLn+Y +++  +      +     +++ weF++++F kg
  PH01001018G0530  30 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNPPEFTARLLPTYFKHSNFSSFIRQLNTYFYSSAFRIWILAFTgfrkiDSERWEFANEYFVKG 123
                      9********************66679**********************************998877766543334444449************* PP

                      XXXXXXXXXXXX CS
     HSF_DNA-bind  90 kkellekikrkk 101
                      +k++l++i+r+k
  PH01001018G0530 124 QKHHLKNIHRRK 135
                      **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-4826134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3026134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3326134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.9E-153053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-2730134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-156981IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-158294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEVAAGGAGA RGGGGGGGAA GGSGGGPAPF LLKTYEMVDD PSTDAVVSWS DASDASFVVW  60
NPPEFTARLL PTYFKHSNFS SFIRQLNTYF YSSAFRIWIL AFTGFRKIDS ERWEFANEYF  120
VKGQKHHLKN IHRRKPIHSH SHQPGALPDN ERALFEDEID RLTREKATLQ ADLWKFKQQQ  180
SGAMIQIEDL ERRVLDMEQR QAKMITFLQQ ASKNPHFVNK LVKMAEASSI FTDAFQKKRR  240
LTGLDYGSET TETTSFYDDH SNTSKQDLLN QNFSGKLKLG LCPAMTESNL ITLSTQSSHE  300
DNGSPHVKHP ECDRMGMECL PLVPQMMELS DTGTSICPYK NSCFTPAVND EGPFPCHLSL  360
TLASCSMDVD RSQASNANGS TLDQERDNPT EATTATMEKD DGTARRSDDN QKSSGDAGTA  420
DATTPRGDAR ATTEALVAPP AVVNDKFWEQ FLTERPGCSE TEEASSGLRR DLSREQMEDN  480
RQASDDTRND SKDMEQLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-1841341129Heat shock factor protein 1
5d5v_B8e-1841341129Heat shock factor protein 1
5d5v_D8e-1841341129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001018G0530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622576.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A0E0K0070.0A0A0E0K007_ORYPU; Uncharacterized protein
STRINGOPUNC02G15430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-105HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]