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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000969G0180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | SBP | ||||||||
Protein Properties | Length: 293aa MW: 32014.6 Da PI: 6.8486 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 48 | 3.3e-15 | 35 | 65 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l efDe+krsCr+rL++hn+rrrk+q+ PH01000969G0180 35 WFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 65 6***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 11.93 | 1 | 63 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.9E-12 | 35 | 68 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.9E-8 | 36 | 62 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.5E-4 | 36 | 50 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MIDYLSQTPS GAKLDHHTDT AWRLYQVLLS VPIGWFHLLA EFDEAKRSCR KRLDGHNRRR 60 RKPQPDNMNS GSFMTSQQGT RFASFAPPRP EVSWSGIIKS EDSPYYTHQV LSNRQHFVGS 120 TSTYSKEGRR FPFLQEGDQI SFSTSATLEI SVCQPLLKTV APPPESSSSN KIFSDGLTQV 180 LDSDCALSLL SSPANSSSVE VSRMVQPTEH IPMAQSLVPN LQFGSSSWFA CSQASSGVST 240 AGFTCPSMDN GHLNTVLVPS SNGNEMNYHG IFHVGAEASS DGTSPSLPFS WQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 62 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000969G0180 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108759 | 1e-39 | AC108759.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence. | |||
GenBank | AP014965 | 1e-39 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-39 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803089.1 | 1e-137 | squamosa promoter-binding-like protein 18 isoform X2 | ||||
Swissprot | Q0J0K1 | 1e-102 | SPL18_ORYSJ; Squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A3Q8AVT8 | 0.0 | A0A3Q8AVT8_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | BRADI4G34667.1 | 1e-128 | (Brachypodium distachyon) | ||||
STRING | Pavir.J30793.1.p | 1e-128 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-15 | SBP family protein |