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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000960G0260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 89aa MW: 9854.05 Da PI: 8.5214 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 5e-09 | 12 | 53 | 14 | 54 |
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 d+iN+ +++L++llP++s + s++ s + L++++ YIksL PH01000960G0260 12 DEINELISKLQSLLPESSrRRASGRSSASNLLKETCSYIKSL 53 68**************555999*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.934 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-9 | 12 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-6 | 12 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-9 | 12 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSGRRAGRIT DDEINELISK LQSLLPESSR RRASGRSSAS NLLKETCSYI KSLHREVDDL 60 SDRLSELMST MDSNSPQAEI IRSLLRSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000960G0260 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101276 | 1e-147 | FP101276.1 Phyllostachys edulis cDNA clone: bphylf037m11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613962.1 | 5e-44 | transcription factor ILI3-like | ||||
Swissprot | A2XD15 | 8e-36 | ILI3_ORYSI; Transcription factor ILI3 | ||||
Swissprot | Q10R47 | 8e-36 | ILI3_ORYSJ; Transcription factor ILI3 | ||||
TrEMBL | A0A0D3HDF7 | 1e-42 | A0A0D3HDF7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BA88 | 1e-42 | A0A0E0BA88_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0EXJ4 | 1e-42 | A0A0E0EXJ4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QYU4 | 1e-42 | A0A0E0QYU4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z729 | 1e-42 | A2Z729_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QUB1 | 1e-42 | I1QUB1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q8LNC7 | 1e-42 | Q8LNC7_ORYSJ; BHLH family protein, putative, expressed | ||||
STRING | OGLUM10G09100.1 | 2e-43 | (Oryza glumipatula) | ||||
STRING | OMERI10G06270.1 | 2e-43 | (Oryza meridionalis) | ||||
STRING | ORUFI10G09690.1 | 2e-43 | (Oryza rufipogon) | ||||
STRING | OS10T0403800-00 | 2e-43 | (Oryza sativa) | ||||
STRING | ORGLA10G0079400.1 | 2e-43 | (Oryza glaberrima) | ||||
STRING | OBART10G09290.1 | 2e-43 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 4e-25 | bHLH family protein |