PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000920G0420

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

SBP

Protein Properties

Length: 692aa MW: 76450.6 Da PI: 6.1694

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000920G0420	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	24	1e-07	125	148	2	25
-SSTT-----TT--HHHHHTT--H CS SBP 2 CqvegCeadlseakeyhrrhkvCe 25 Cq++gC+adl++a++yh+rhk PH01000920G0420 125 CQADGCQADLTNARDYHKRHKNLA 148 ********************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.4E-7	119	145	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-6	123	145	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.66E-5	430	576	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.06E-5	466	574	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MEAGFLREDG QTGVARMSGG LKMKKKSLEW DLNDWRWDGN LFLATPSNAT APSGCSNREL 60 GRAEGEIDFG VIDKRRRVAP EDDREECSDA AITNGDHGRM VIQRGQSSEE ERRRKDACSS 120 SAPSCQADGC QADLTNARDY HKRHKNLAAI AGTQVYQDML KNANSAAITS NAGSYVANGF 180 TIHESTRPPI PVGTESSAED PPDKRRVQNF DLNEANVEED ESRTDKIVFK LFGKEPKDFP 240 VDLRAQILNW LSHCPSDMES YIRPGCVILT IYLRLPNWMW DKLDADPAPW IEKLISISID 300 SFWRTGWVYA RVQDCLTLSC NGRLMLVSPW QPVIGDKHQI LSVTPIAVAC SSTANFSVKG 360 FNIVQPTTKL LCIFGGKYLI QEATQMLLDD TTMQQGPQCL TFSCSFPSTS GRGFIEVEDC 420 DQSSLSFPFV VAEESEWCAV VKKLLDTLFQ GNIDLDVPSP VEFALGEDLI FTAVNKRSKP 480 LVDFLLRYTT NFAPVDSGAV APVRFLFTPD ITGPSNITPL HIAATISDAA GVLDALTDDP 540 QQLGIKAWKN ARDATGFTPE DYARKRDHIS YIQMVQSKID SRLPNAHVSV AMPSTDITAK 600 HASRLRSTDQ TTFDVQKSQQ SDKRPLSCRH CVQHLAYRPH SKRFLSNRPA VLSLLAIAAV 660 CVCVGLIMHS ALRVSGMTGP FFWNSLLSGP E*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MEAGFLREDG QTGVARMSGG LKMKKKSLEW DLNDWRWDGN LFLATPSNAT APSGCSNREL  60
GRAEGEIDFG VIDKRRRVAP EDDREECSDA AITNGDHGRM VIQRGQSSEE ERRRKDACSS  120
SAPSCQADGC QADLTNARDY HKRHKNLAAI AGTQVYQDML KNANSAAITS NAGSYVANGF  180
TIHESTRPPI PVGTESSAED PPDKRRVQNF DLNEANVEED ESRTDKIVFK LFGKEPKDFP  240
VDLRAQILNW LSHCPSDMES YIRPGCVILT IYLRLPNWMW DKLDADPAPW IEKLISISID  300
SFWRTGWVYA RVQDCLTLSC NGRLMLVSPW QPVIGDKHQI LSVTPIAVAC SSTANFSVKG  360
FNIVQPTTKL LCIFGGKYLI QEATQMLLDD TTMQQGPQCL TFSCSFPSTS GRGFIEVEDC  420
DQSSLSFPFV VAEESEWCAV VKKLLDTLFQ GNIDLDVPSP VEFALGEDLI FTAVNKRSKP  480
LVDFLLRYTT NFAPVDSGAV APVRFLFTPD ITGPSNITPL HIAATISDAA GVLDALTDDP  540
QQLGIKAWKN ARDATGFTPE DYARKRDHIS YIQMVQSKID SRLPNAHVSV AMPSTDITAK  600
HASRLRSTDQ TTFDVQKSQQ SDKRPLSCRH CVQHLAYRPH SKRFLSNRPA VLSLLAIAAV  660
CVCVGLIMHS ALRVSGMTGP FFWNSLLSGP E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000920G0420

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614292.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_015614297.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_025880633.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0E0FKF3	0.0	A0A0E0FKF3_ORYNI; Uncharacterized protein
STRING	BRADI2G11240.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-104	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]