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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000919G0460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | CAMTA | ||||||||
Protein Properties | Length: 1149aa MW: 128141 Da PI: 6.7196 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 173.8 | 2.4e-54 | 122 | 239 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 lke ++rwl++ ei++iL+n++ ++++ e++++p+sg+l+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een+++ PH01000919G0460 122 LKEaQQRWLRPAEICEILKNYRDFHIAPEPPNKPPSGTLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENI 215 45559***************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhyle+k PH01000919G0460 216 QRRTYWMLEEDFMHIVLVHYLETK 239 *********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.349 | 118 | 244 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.8E-72 | 121 | 239 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.4E-48 | 124 | 237 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.1E-7 | 569 | 654 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 4.37E-18 | 570 | 655 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.2E-7 | 570 | 647 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 1.31E-15 | 761 | 864 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.43E-12 | 764 | 862 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.8E-16 | 764 | 867 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.918 | 770 | 864 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 803 | 835 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.013 | 803 | 832 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3200 | 842 | 871 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.92E-8 | 962 | 1016 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.4 | 965 | 987 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.096 | 966 | 995 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.031 | 967 | 986 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 988 | 1010 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.56 | 989 | 1013 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-4 | 991 | 1010 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1149 aa Download sequence Send to blast |
MAAQPSQGGV APAVVAEVRR QRLDGNRLAG GIKESKREAL EEEIGRKGVK GRCRRERRKK 60 KEERRRARGV KEEWVDEVLL KRIRMQSVRM SGSYRTFRVV ELLGWNLYGK YCRVRKDIEQ 120 ILKEAQQRWL RPAEICEILK NYRDFHIAPE PPNKPPSGTL FLFDRKVLRY FRKDGHNWRK 180 KKDGKTVKEA HERLKSGSID VLHCYYAHGE ENENIQRRTY WMLEEDFMHI VLVHYLETKG 240 GKSSRARGNN DMLQAAVLDS PLSQLPLQTI EGESSLSGQA SEYEEAESVS LIHIPIMHSA 300 SKAKFGAADT YSGGAGYHSF TQMQQHQNGI GPVIDASTFS SYAPASSIGN YQGLQHAMAH 360 NTSFYSSSQD NSPVVLNDSS LGLATNGRES QTDLPSWNEV MKPDKGSVQM PHLQLPVSPE 420 QGTFTEDPGV EYLTFDEVFS DGLSLDDLSA AGADGESFWQ FSSATGDLSA TENSFPQNDG 480 SLEAAIGYPF LKTQSSNLSD VAKDSFKKTD SFTRWMSKEL PEVEDSQIQS SSGAYWNTEE 540 ADSIIEASSR EPLDQFTVAP MLSQDQLFSI VDFSPSWTYT GSKTKVLVTG KFLTNQVTER 600 CKWSCMFGEI EVPAEISADG TLHCYSPPHR PGRVPFYITC SNRLACSEVR EFEFRLSPSQ 660 YMDAPSPHGA TNKVYLQIRL DKLLSLGPDE YQATISNPSL EMIDLSKKIS SLMTNNDEWS 720 KLLKLADDNE LLTGDQQDQF AENLIKEKLH VWLLYKVGDG GKGPSVLDDE GQGILHLAAA 780 LGYDWAIRPT VTAGVNINFR DVHGWTALHW AAFCGRERTV VALIALGAAP GALTDPTPDF 840 PSGSTPADLA SANGYKGISG FLAESSLTSH LQALNMKEAN MAEISGLPGI GDVTERSASQ 900 PAIGDSLGAV RNAAQAAARI YQVFRVQSFQ RKQAVQYEDE KSGISDAHAL SLLSVKPSKP 960 GQFDPLHAAA SRIQNKFRGW KGRKEFLLIR QRIVKIQAHV RGHQVRKHYR KIVWSVGIME 1020 KVILCWRRRG AGLRGFRSAE GAIESSRGGT SSNSITDKPA VDDYDFLQEG RKQTEERLHK 1080 ALARVKSMAQ YPEARDQYQR ILTVVSKIQE SQAMQEKMLE DSAEMDESHF MSEFKELWED 1140 DTPLPGYF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 61 | RRERRKKKE |
2 | 56 | 61 | RRKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000919G0460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234691.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A0A3L6TUJ2 | 0.0 | A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2 | ||||
STRING | BRADI3G23800.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |