PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000887G0620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GeBP | ||||||||
Protein Properties | Length: 286aa MW: 30748.7 Da PI: 10.8005 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 47.6 | 4.5e-15 | 88 | 176 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +q+lw++ De++lL G f+a++g+ p d+ a++e +++s+s + + + K++rLK Kf + + s +h++ + +ls + PH01000887G0620 88 IQKLWTDADEVALLTGAAAFRARHGAAPRLpDMGALFESLRGSLSPHLDQAKVYYKLKRLKSKFLHSAPA-------ATSGPHERRVRDLSADL 174 69************************98877**********************************99888.......67788888888888888 PP DUF573 96 Wg 97 Wg PH01000887G0620 175 WG 176 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-15 | 89 | 176 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDAAARLHPS PPRSKKRSSR AKPRAGDRRR SPNPNPSSRR DRDHGASAPS RKSERKRKPR 60 SFADSASLAI AIAAPASSGG GGGGGHGIQK LWTDADEVAL LTGAAAFRAR HGAAPRLPDM 120 GALFESLRGS LSPHLDQAKV YYKLKRLKSK FLHSAPAATS GPHERRVRDL SADLWGAELA 180 PPVEDDVEAE EGDADEGYIA GDVEVAVRLP VVSEVLGEHW RRNARALSGV SLEKGLALLR 240 AGEGRVVETK WRRQLDAEMR TQVRRHDLAK EVYGLLTDAV KGLGP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000887G0620 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649213.1 | 1e-111 | STOREKEEPER protein | ||||
Refseq | XP_008649214.1 | 1e-111 | STOREKEEPER protein | ||||
Refseq | XP_020395036.1 | 1e-111 | STOREKEEPER protein | ||||
TrEMBL | F2EDB7 | 1e-111 | F2EDB7_HORVV; Predicted protein | ||||
STRING | GRMZM2G008558_P02 | 1e-110 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-06 | DNA-binding storekeeper protein-related transcriptional regulator |