PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000878G0370
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 388aa    MW: 41639.8 Da    PI: 9.1772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000878G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-057092123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F r  nL+ H r H
  PH01000878G0370 70 FVCEACGKGFQREQNLQLHRRGH 92
                     89*******************88 PP
2zf-C2H2130.0003152174123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg+++  + +L+ H + +
  PH01000878G0370 152 WRCDRCGRRYAVQADLRAHAKAC 174
                      58*****************9876 PP
3zf-C2H210.70.0016182200523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg+ Fsr++++++H   +
  PH01000878G0370 182 DCGTIFSRRDSFVTHRAFC 200
                      9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-66992No hitNo description
SMARTSM003550.0137092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8227092IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-57092IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM0035578116146IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.41E-6147172No hitNo description
SMARTSM00355100152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MKGSTVQPQD ENMSKSNLRS AASGDQASSV SSGHPLPPPA QKRRGHPRKH DPDAEVVALS  60
PGTLTATHRF VCEACGKGFQ REQNLQLHRR GHNLPWKLKQ RISPKGGAAV VRRKVYVCPE  120
PSCPHHDPAH ALGDLTGVKK HFSRKHGTER RWRCDRCGRR YAVQADLRAH AKACGTRQYR  180
CDCGTIFSRR DSFVTHRAFC DALAEESERA AAAASSQLPM VVDTSQPTSC NIGWIQESCR  240
GQRVRQLVQE SAALFGTVAT AVAPAPHMSA TALLQKAAEM GATLSRPSSH GQMAGAHHGG  300
TSGHHVGDGF GHISGGGNDG DLTRDFLGLR AFSRREDMLG IVGLDSCMES AALGHEQGEL  360
RNKRAMACLI SSGIGATDEP ISDAWTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-28149217472Zinc finger protein JACKDAW
5b3h_F2e-28149217472Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000878G0370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020250876.11e-118protein indeterminate-domain 11-like
SwissprotQ8H1F55e-96IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3L6SPR71e-115A0A3L6SPR7_PANMI; Zinc finger protein NUTCRACKER-like
STRINGSi001334m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.18e-81indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]