PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000849G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 277aa    MW: 29022.3 Da    PI: 7.7254
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000849G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.12.1e-31161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ ++y+++ed+ ++ +i w + ++sfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv   +         weF+h+sF +g+++ll+
  PH01000849G0330  16 FVWRTYRMVEDPGTDGVIGWGRGNDSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVGPVR---------WEFAHSSFLRGQTHLLR 100
                      99***************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+ s
  PH01000849G0330 101 NIVRRGS 107
                      ***9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-4812105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3513105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.31E-3113105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-2716105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-161639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-165466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-166779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAASVGGGGG EAAAPFVWRT YRMVEDPGTD GVIGWGRGND SFVVADPFVF SQTLLPAHFK  60
HNNFSSFVRQ LNTYGFRKVG PVRWEFAHSS FLRGQTHLLR NIVRRGSAGA GGGSKRKDAA  120
AAADDANDDM TMVATEVVRL KQEQRTIDDR VTAMWRRVQE TERRPKQMLA FLLKVVGDRD  180
RLHRLVGGDG NAGGNSAAAV DGFAGGEQAK GGEKRARLLL DDDFGGAGAF GPDAVDFAGF  240
YTGGGAFADV AMDAAAGASS GGGAGCSFAF GVDSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23110512129Heat shock factor protein 1
5d5v_B4e-23110512129Heat shock factor protein 1
5d5v_D4e-23110512129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000849G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2346531e-171KF234653.1 Triticum aestivum heat shock factor C2a (HsfC2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.11e-128heat stress transcription factor C-2b
SwissprotQ0DBL61e-123HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLF2CS331e-133F2CS33_HORVV; Heat shock factor C2b
STRINGMLOC_73300.11e-133(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-53heat shock transcription factor C1