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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000847G0490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 30661.6 Da PI: 5.366 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv + +W+++++ g+ R++k+c++rw +yl PH01000847G0490 14 KGPWTAEEDQKLVSFLLRNSQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.3e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ PH01000847G0490 70 LSEDEEKTVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 589****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-19 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.781 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.13E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 26.963 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.94E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL RNSQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEDEEKTVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPVTHKPLQ PAPPPQQPQH LAGGDSPEHK VPEEENVVLA TGSQLSGGHD VFCTDEVPMM 180 QLDDVILPYD VAVPNISSSS ATGSPESSSS SSSASASSSG GFEDEWLPPI MEWPESMYLM 240 GLDDIVTGLT SWDEFEDPFN TYQRIALFDH QETWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000847G0490 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU390881 | 0.0 | GU390881.1 Fargesia fungosa MYB1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186333.1 | 1e-138 | protein ODORANT1-like | ||||
Swissprot | Q9C7U7 | 8e-85 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | A0A0F6MY17 | 1e-163 | A0A0F6MY17_9POAL; Myb R2R3 | ||||
STRING | EMT20029 | 1e-137 | (Aegilops tauschii) | ||||
STRING | Traes_5DL_46D39C394.1 | 1e-137 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 5e-84 | myb domain protein 20 |
Publications ? help Back to Top | |||
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