PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000840G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 369aa    MW: 41618.1 Da    PI: 7.8888
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000840G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07427226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k++lC+ff+  G C  Gd C F+H+
  PH01000840G0410  4 KRVLCKFFMH-GACLKGDYCEFSHD 27
                     89****8888.*************5 PP
2zf-CCCH28.42.8e-093555526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C f+++ G C+yG+rC++ H+
  PH01000840G0410 35 VCTFYQK-GACSYGSRCRYDHV 55
                     5******.*************7 PP
3zf-CCCH19.22.1e-06153173526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ fa+ G C+yG+ C+ +Hg
  PH01000840G0410 153 ICS-FAAAGNCPYGEECPHMHG 173
                      577.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156632.9E-8161No hitNo description
SMARTSM003566.6E-6228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5583057IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-53254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427148175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018149174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4153173IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.83E-10205281No hitNo description
Gene3DG3DSA:3.30.40.108.3E-10213276IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.87E-4216276No hitNo description
SMARTSM001845.2E-7217274IPR001841Zinc finger, RING-type
PfamPF000976.2E-7217274IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.327217275IPR001841Zinc finger, RING-type
PROSITE patternPS005180241250IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.638304333IPR000571Zinc finger, CCCH-type
SMARTSM003560.03304332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSTKRVLCKF FMHGACLKGD YCEFSHDWSD QPNNVCTFYQ KGACSYGSRC RYDHVKVSRN  60
STVPAPPSSS TATRVASTSL QLLSSGRPLH MGHQTDSSNQ RQQISTAMLA HSASKPAWRN  120
DFQHDSVSED GIDWSSNRTV QNQTSMKPAD LTICSFAAAG NCPYGEECPH MHGDLCTTCG  180
KMCLHPYRPD EREEHIKLCE KKHKHLESLK RSQEIECSVC LDHVLSKPTA AERKFGLLSE  240
CDHPFCISCI RNWRSNSPTS GMDVNSALRS CPICRKLSYY VIPSVLWYFS KEEKKEITDS  300
YKAKLKSIDC KHFDFGTGTC PFGTSCFYKH AYRDGHLEEV ILRHLDADDG STVIAKNIRL  360
SDFLSQLHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ESLKRS
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000840G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943560.0FP094356.1 Phyllostachys edulis cDNA clone: bphyem202c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563906.10.0E3 ubiquitin-protein ligase makorin isoform X1
RefseqXP_010227725.10.0E3 ubiquitin-protein ligase makorin isoform X1
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A287WBU80.0A0A287WBU8_HORVV; Uncharacterized protein
STRINGMLOC_63870.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-156C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]