PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000823G0650
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 601aa    MW: 63686.3 Da    PI: 8.0528
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000823G0650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17e-09262283526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f+++G C+ Gd C +aHg
  PH01000823G0650 262 PCPEFRKGGSCRKGDACEYAHG 283
                      8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.86E-771147IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.54175145IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.5E-976170IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.526110145IPR002110Ankyrin repeat
SMARTSM003561.2E-5257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216257285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4262285IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6262283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4291322IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.357293317IPR000571Zinc finger, CCCH-type
SMARTSM0035637293316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MCSGPCKPST PPPNTTTTTT AAKDSAVMAS VLLELAAADD VVEFRRAVEE EKVSLNAACL  60
WYGPSAAGPG RLGLQRRTPA MVAALYGSTA VLTYVLSAAP SEAGRASDTD GATALHLASA  120
GGAANAVAAT HLLLAAGAST DALSASGLRA GDLLPRVATA AEKPLRLLLK SPAVSPSCSP  180
KKSASPPAMA AAQEPKKEYP PDLTLPDLKS GLFSTDEFRM YSFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRRYSYSC VPCPEFRKGG SCRKGDACEY AHGVFECWLH PAQYRTRLCK  300
DEVGCPRRIC FFAHKPEELR TVNPSAVSVG MQPVSSPRSS PPNGLDMAML NPSWPSSPAS  360
RLKTALGARE LDFDLELLAL DQYQQKLFDK VSNAPSPRAS WCGAGGLGSP LTAAAPARTV  420
PDYTDLLGSV DPAMLSQLHA LSLKQAGDMP AYSSLPDTQL HMPTSPMVGA NTTAFGLDHS  480
MAKAIMSSRA SAFAKRSQSF IDRGGRAPAT RSLMSQATTG APSMLSDWGS PDGKLDWGVQ  540
GDELHKFRKS ASFGFRAQSA MPVATPATPA EPDVSWVNSL VKDGHAGDIF AQWLEQEQMV  600
A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000823G0650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969790.0FP096979.1 Phyllostachys edulis cDNA clone: bphyem206f17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569054.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A446JL280.0A0A446JL28_TRITD; Uncharacterized protein
STRINGBRADI2G38247.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-127C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]