PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000811G0380

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 315aa MW: 34871.4 Da PI: 10.1876

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000811G0380	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.5	5.1e-07	21	45	4	28
XCHHHCHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaei 28 + rr+++NReAAr+sR+RKk e+ PH01000811G0380 21 QRTMRRLAQNREAARKSRLRKKLEQ 45 566799***************9876 PP
2	bZIP_1	30.5	8e-10	70	98	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le PH01000811G0380 70 KTMRRLAQNREAARKSRLRKKAYVQQLES 98 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.4E-5	18	45	No hit	No description
PROSITE pattern	PS00036	0	25	40	IPR004827	Basic-leucine zipper domain
SMART	SM00338	0.001	65	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	68	112	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-7	70	110	No hit	No description
Pfam	PF00170	9.2E-7	70	98	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-7	71	113	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.6E-34	152	227	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MADASSRTDT STVLDNGDKN QRTMRRLAQN REAARKSRLR KKLEQGQSGA IMASNSSDRS 60 DRSDKPLDQK TMRRLAQNRE AARKSRLRKK AYVQQLESSK LKHAQLEQEL QRARKQGIFI 120 SSSGDQTHAM SGNGALTFDI EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY 180 DEIFKVKGVA AKADVFHILS GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG 240 LTNLQQSSQQ AEDALSQGME ALQQSLAETL AGSLGPSSSS GNVANYMGQM AMAMGKLGTL 300 ENFLRQASLF GTSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000811G0380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061586	0.0	BT061586.1 Zea mays full-length cDNA clone ZM_BFb0161M21 mRNA, complete cds.
GenBank	JX469937	0.0	JX469937.1 Zea mays subsp. mays clone UT3196 bZIP-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001333859.1	0.0	uncharacterized protein LOC100279481
Refseq	XP_008651318.1	0.0	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_008651320.1	0.0	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396043.1	0.0	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396044.1	0.0	uncharacterized protein LOC100279481 isoform X2
Swissprot	Q7X993	1e-175	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A3L6E4R9	0.0	A0A3L6E4R9_MAIZE; Transcription factor TGA2.1
TrEMBL	C0HGY0	0.0	C0HGY0_MAIZE; Transcription factor TGA6
TrEMBL	K4JBS2	0.0	K4JBS2_MAIZE; BZIP-type transcription factor (Fragment)
STRING	GRMZM2G361847_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-138	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]