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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PH01000794G0210 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 273aa MW: 32099.3 Da PI: 8.4832 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000794G0210 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.2 | 9.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtfskRr+gilKKA E+ vLCdae+ v+ifss gkly+y+s
PH01000794G0210 9 KRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEIGVVIFSSAGKLYDYCS 59
79***********************************************96 PP
|
| 2 | K-box | 22.9 | 3.7e-09 | 71 | 107 | 1 | 37 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRh 37
yq++sgk l+++k++sl+ e++++kke++n+q e+R
PH01000794G0210 71 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRP 107
79999999*************************9995 PP
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| 3 | K-box | 28.8 | 5.1e-11 | 139 | 173 | 36 | 70 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKn 70
Rhl+GedL+sL+ +eL +e++L+++ ++ R+k+
PH01000794G0210 139 RHLKGEDLNSLQPRELIAIEEALQNGQTNLRDKQA 173
9******************************9975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MGRGKIEIKR IENSTNRQVT FSKRRAGILK KAREIGVLCD AEIGVVIFSS AGKLYDYCSP 60
KTTLPRILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDN MQIELRPVLH LRFCIFYLYT 120
LRCLRMVRLW WFVPGDGCRH LKGEDLNSLQ PRELIAIEEA LQNGQTNLRD KQAIIGFRMD 180
HWRMHRRNIM EYFLEQELLL VLIIHCLCGW LQEKMLEDEH KLLAFRMHQQ DVELSGGMRE 240
LELGYHHGRD FAPQMPLTFR VQPSHPNLQE DE*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP091609 | 1e-145 | FP091609.1 Phyllostachys edulis cDNA clone: bphyst014n10, full insert sequence. |
| Publications
? help Back to Top |
- Ronai Z, et al.
Transcription factor binding study by capillary zone electrophoretic mobility shift assay.
Electrophoresis, 2003. 24(1-2): p. 96-100
[PMID:12652578] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Kang HG,An G
Morphological alterations by ectopic expression of the rice OsMADS4 gene in tobacco plants.
Plant Cell Rep., 2005. 24(2): p. 120-6
[PMID:15703945] - Cheng CH, et al.
A fine physical map of the rice chromosome 5.
Mol. Genet. Genomics, 2005. 274(4): p. 337-45
[PMID:16261349] - Chen C, et al.
Adapting rice anther culture to gene transformation and RNA interference.
Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
[PMID:17172048] - Yoshida H, et al.
superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
Plant Biotechnol. J., 2007. 5(6): p. 835-46
[PMID:17764519] - Yao SG,Ohmori S,Kimizu M,Yoshida H
Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
Plant Cell Physiol., 2008. 49(5): p. 853-7
[PMID:18378529] - Seok HY, et al.
Rice ternary MADS protein complexes containing class B MADS heterodimer.
Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
[PMID:20888318] - Wang H, et al.
OsMADS32 interacts with PI-like proteins and regulates rice flower development.
J Integr Plant Biol, 2015. 57(5): p. 504-13
[PMID:25081486]
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