PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000786G0600

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 400aa MW: 42221.4 Da PI: 5.7011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000786G0600	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.2e-13	196	242	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +e+Lr+llP+ +K +Ka+ L ++++++k+L PH01000786G0600 196 KSHSEAERRRRERINAHLERLRSLLPNT-----TKTDKASLLAEVIQHVKEL 242 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.238	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-11	196	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-16	197	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-16	197	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-14	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.21E-6	206	245	No hit	No description
CDD	cd04873	5.02E-6	280	326	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.7E-4	280	327	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MGGHGDRHRH HRQEVGVLVD EEELEQHARA CGGATSGVAE QEVGGGCGGQ EAAGMVFEAS 60 SSVGSVSATM APPPILCWPP PVPAPPQQPI HGAIYHHNIG GGQGPFFPLL PPQPPPPPSF 120 FADFYARRAL QFAHDHSGGA SSSSDPLGLG GLYMGYHGSP VAGMMMPPPF APSPFGDLGR 180 MTAQEIMDAK ALAASKSHSE AERRRRERIN AHLERLRSLL PNTTKTDKAS LLAEVIQHVK 240 ELKRQTSEIT EEASPLPTES DELTVDASSD EDGRLVVRAS LCCDDRTDLL PDLIRALKAL 300 RLRALKAEIT TLGGRVKNVL VVTGDDSAVC AGTDGDEQQE EATQAPMSPQ HTVASIQDAL 360 RAVMERTASA AEESGGSAGG GLKRQRTTSL SAILENRSI*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MGGHGDRHRH HRQEVGVLVD EEELEQHARA CGGATSGVAE QEVGGGCGGQ EAAGMVFEAS  60
SSVGSVSATM APPPILCWPP PVPAPPQQPI HGAIYHHNIG GGQGPFFPLL PPQPPPPPSF  120
FADFYARRAL QFAHDHSGGA SSSSDPLGLG GLYMGYHGSP VAGMMMPPPF APSPFGDLGR  180
MTAQEIMDAK ALAASKSHSE AERRRRERIN AHLERLRSLL PNTTKTDKAS LLAEVIQHVK  240
ELKRQTSEIT EEASPLPTES DELTVDASSD EDGRLVVRAS LCCDDRTDLL PDLIRALKAL  300
RLRALKAEIT TLGGRVKNVL VVTGDDSAVC AGTDGDEQQE EATQAPMSPQ HTVASIQDAL  360
RAVMERTASA AEESGGSAGG GLKRQRTTSL SAILENRSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000786G0600

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106649	0.0	AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649780.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	9e-74	BH030_ARATH; Transcription factor bHLH30
TrEMBL	J3LM73	0.0	J3LM73_ORYBR; Uncharacterized protein
STRING	OB03G21490.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]