PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000770G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 313aa    MW: 34172.6 Da    PI: 8.9676
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000770G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.91.7e-1547754876
                     SEEETTT--SS--S-STTTT-------S- CS
              SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76
                     rfh+l efD++krsCrrrLa+hnerrrk+
  PH01000770G0270 47 RFHQLPEFDQGKRSCRRRLAGHNERRRKP 75
                     9**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.067175IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.39E-124679IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.8E-44762IPR004333Transcription factor, SBP-box
PfamPF031101.7E-84774IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEAGQQRRRG RGRPRAQVRQ EDLLRAGRGW RERERGCGGG WQEGFLRFHQ LPEFDQGKRS  60
CRRRLAGHNE RRRKPPPGPL SSRYGRLGAS FHEEPGRFRS FLLDFSYPRV PSSVRDALPA  120
IQPGDRMSGT IQWQMNHELH PHRGTVAGYG DHAYNGQGGS ASGTPMLPAF ELPADGCLAG  180
VDTESSCALS LLSTQPWDST HSASHNRSPA MSTTSTFEGN PVAPSVMASN YLAASSSWSS  240
SRGHEGSRNV QQHHLPHEAA LHEVHPGSVH HDQFSGELEL ALQGSGPPNQ PQVEHGSGSS  300
FSHSSNAMNW SL*
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000770G0270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0953130.0FP095313.1 Phyllostachys edulis cDNA clone: bphylf047j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610961.11e-131squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0571e-132SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A3Q8AHS11e-173A0A3Q8AHS1_9POAL; Squamosa-promoter binding protein-like protein
STRINGOBART09G14800.11e-133(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-18squamosa promoter binding protein-like 9