PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000754G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 896aa    MW: 97175.5 Da    PI: 6.547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000754G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000737007371355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  PH01000754G0430 700 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 737
                      67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.1E-316160IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.525687736IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-4700747IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MAVGDALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGFC GHTSCPAGSE VSEALGAEVG  60
CAAAADTMCS LVKKAMASQV HVVGQGTVGR AAFTGNHQWI VHGTANDHGL SSEVAAEMNS  120
QFRAGIQTIA IIPVLPRGVL QLGSTGVVIE NTNFVMHAKK LCSQLNNRSS MAASASVKNA  180
STQQGQSRPL HGAPNVHCAD NCSKVFSQFP VTREQYSRAD TATVSSSASL LKVAQQNGRA  240
VREHIVYAKP DARFVQQASY CDNRLGSNTQ SVAMSSGLIS SSLTSVKKQP VLMNNTRQLE  300
FGNGADSLQD LPRNVLLNSL VYQNPFIHEN TNINLSHGRD EVSSEINGSV NFDFLIGGAR  360
VVRANLCTSA SSQVLDQRTY STSGMLLQKQ PPVSCNVPQS SEFTMKMRSP ERGSFQAPAA  420
LSSESDVQAS NGLKTGISQE NQLSRSNHSR QDQMVNTVND PSVTVSTQGM KTMDGCTLPG  480
MPNERASLLL LQPTADNDLF DILGPEFHQL CQNVGADLVP WSDTKSQSSD RDMPETSIDL  540
DSSPIFNSLD NEFPYSGIFS LTDTDQLLDA VISNVNPGGK QSSDDNTSCK TSLTDIPSTS  600
YLGSKELKQC DSSGVPSTLI KHESAQFVKQ PCYFDKAEDS CLSQNNGMHK SQIRLWIESG  660
QNMKCESASA SNSKGLDTPS KANRKRSRPG ESPRPRPKDR QLIQDRIKEL REMVPNGAKC  720
SIDALLEKTV KHMLFLQSMT KHADKLKNST ESKILGGENG PLWKDYLESG ATWAFDVGSQ  780
SMTCPIIVED LDRPRQMLVE MLCEDRGIFL EIADFIKGLG LTILRGVMEA RKSKIWARFT  840
VEANRDVTRM EIFPSLVRLL EPNCDSSGAA ENANNVNMPL GLVHQPVIPA TGRIQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000754G0430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0transcription factor LHW isoform X1
TrEMBLA0A0E0MCQ20.0A0A0E0MCQ2_ORYPU; Uncharacterized protein
STRINGOPUNC11G03540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.19e-44conserved peptide upstream open reading frame 7