PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000732G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 282aa    MW: 28902 Da    PI: 5.8829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000732G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09921311155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  PH01000732G0100  92 LRRERIAERMKALQELIPNA-----NKTDKASMLDEIIDYVKFLQ 131
                      6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.37681130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-987136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1291139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1291138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-692131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-1093135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQPNGREMHG GGGQDDFLDQ MLSTLRTAWP DLGSDDHSAA AFDESALLAS HLRHHQICGG  60
GDKPGRDQAL YNGFGAARMH GTAAVQPPLG QLRRERIAER MKALQELIPN ANKTDKASML  120
DEIIDYVKFL QLQVKVLSLS RLGGAAAVAP PVANMSSESN GNGNGNGTSS SGNGDAANGN  180
STGDNGGSTL RVTEQQVARL MEEDMGSAMQ YLQGKGLCLI PISLASALSS ATSSSLLPRT  240
SIRPVGGAGH QGGSPASPPL ASGVGGDDSR SIKDTGAGGE Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000732G0100
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697797e-56EU969779.1 Zea mays clone 335593 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.16e-98uncharacterized protein LOC100284814
SwissprotQ9LSQ33e-58BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A1E5W8J71e-112A0A1E5W8J7_9POAL; Transcription factor bHLH69
STRINGOPUNC02G33030.11e-105(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.19e-41LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]