PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000727G0540
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 459aa    MW: 50257 Da    PI: 9.1361
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000727G0540genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.95.1e-0995136243
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                      ++ k +rr+++NReAAr+sR RKka+i++ e    +L    +
  PH01000727G0540  95 RDQKIQRRLAQNREAARKSRMRKKAYIQQMESSRSKLMHLEQ 136
                      56799*************************987777655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-789141No hitNo description
SMARTSM003385.5E-794192IPR004827Basic-leucine zipper domain
PfamPF077162.9E-796140IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.24396140IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.94E-798141No hitNo description
CDDcd147084.75E-2298150No hitNo description
PROSITE patternPS000360101116IPR004827Basic-leucine zipper domain
PfamPF141449.4E-30182258IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAPYLPISGN HGVVAALSVA APGMATEAGR FCLPRAAAAA QPENWGDSGI VVTSPLTDTS  60
TDSGNKHPAP MGGGGGAQRG LVCVDSSAVS KERTRDQKIQ RRLAQNREAA RKSRMRKKAY  120
IQQMESSRSK LMHLEQELQR ARQQGIFIGS GGSSDHGYSI GGNGTLAFDL EYARWLDDHQ  180
RHINDLRVAI NAQISDDELR VLVDAVMIHY DQVFRLKSFA TKSDVFHVLS GMWVSPAERF  240
FMWLGGFRSS ELLKVLASHL ESLTDQQLMG ICNLQQSSQQ AEDALSQGME VLQQTLAESL  300
ASAAAVGPSA GADNVTNYMG QMAIAMAKLS TLENFLRQAD LLRHQTLQQM HRILTTRQAA  360
RALLVISDYF SRLRALSSLW PVDFSAALGG NVPAGCRVCD ADLSISRYFG MHLDGNKLWT  420
RFLSLTTRNR KRGSNSGDYE GVFVDHLRKS WSVVGVWQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000727G0540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229877.20.0transcription factor TGAL3
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0Q3L6230.0A0A0Q3L623_BRADI; Uncharacterized protein
STRINGOS06T0265400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-133bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]