PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000712G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 448aa    MW: 49252.3 Da    PI: 7.0087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000712G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS90.33e-28361522118
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      v lL++cA  v++g++e+a+ +L+++ +las d+  ++qRlaa+f+ AL ++l++ v++l++al + ++s  +s     a++  +++ P+lk++
  PH01000712G0670  36 VGLLYQCASEVAAGSFERANLCLEHIMQLASLDApHTLQRLAAVFADALVRKLLNLVPGLSRALLSASNS-ADSHLIPVARRHMFDMLPFLKLA 128
                      679*******************************99**************************99655554.3555566688899********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfd 118
                      +lt+N+aIlea+ege+ vHi+Df+
  PH01000712G0670 129 YLTTNHAILEAMEGEKFVHIVDFS 152
                      ***********************7 PP
2GRAS214.55.7e-66155440155374
             GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledl..el....eeLrvkpgEalaVnlvlqlhrll............................ 214
                      k+ l ++   Lak Ae++++pf+fn++ + +l+++  +l    ++Lrv++gEala+++vlqlhrll                            
  PH01000712G0670 155 KDFLANMSAVLAKEAEAFDIPFQFNAV-EAKLDEMdmDLdalrHNLRVRSGEALAISVVLQLHRLLaaddakrhaegltplqiiarsspssfge 247
                      5668889999****************6.5556555223311115679999******************************************** PP

             GRAS 215 ..............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                                                    +++     +  ++L+++k lsPk++vv+eqea+hn++ F erf eal+yy++lfd+le  +++e
  PH01000712G0670 248 llerelntrlqlspdasvlsslspqsplvaHSKP----KLGSFLSAIKALSPKIMVVTEQEANHNGGAFHERFDEALNYYASLFDCLERAAATE 337
                      ***********************97665433333....4557*********************************************9998887 PP

             GRAS 279 s....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdr 365
                            er+ vEr++lg+ei+++vacegaer+erhe++++W +r+++aG++ v ls++  ++a+ ll+ ++   gy+v+++   ++++++W+++
  PH01000712G0670 338 RcagaAERARVERVVLGEEIRSIVACEGAERKERHERARQWAQRMQAAGLERVGLSYSGLMEARKLLQSCGwAGGYEVKHDadGHCFFFCWHRK 431
                      778889*****************************************************************8888****553378999****** PP

             GRAS 366 pLvsvSaWr 374
                      pL++vSaWr
  PH01000712G0670 432 PLYAVSAWR 440
                      ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.5729417IPR005202Transcription factor GRAS
PfamPF035141.0E-2536152IPR005202Transcription factor GRAS
PfamPF035142.0E-63155440IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MTSSATSSPA SSLYSPSPCG AWVQELSQDQ HGVRLVGLLY QCASEVAAGS FERANLCLEH  60
IMQLASLDAP HTLQRLAAVF ADALVRKLLN LVPGLSRALL SASNSADSHL IPVARRHMFD  120
MLPFLKLAYL TTNHAILEAM EGEKFVHIVD FSGRKDFLAN MSAVLAKEAE AFDIPFQFNA  180
VEAKLDEMDM DLDALRHNLR VRSGEALAIS VVLQLHRLLA ADDAKRHAEG LTPLQIIARS  240
SPSSFGELLE RELNTRLQLS PDASVLSSLS PQSPLVAHSK PKLGSFLSAI KALSPKIMVV  300
TEQEANHNGG AFHERFDEAL NYYASLFDCL ERAAATERCA GAAERARVER VVLGEEIRSI  360
VACEGAERKE RHERARQWAQ RMQAAGLERV GLSYSGLMEA RKLLQSCGWA GGYEVKHDAD  420
GHCFFFCWHR KPLYAVSAWR PAGHWSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-236544032375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000712G0670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152680.10.0scarecrow-like protein 3
TrEMBLA0A287QZI30.0A0A287QZI3_HORVV; Uncharacterized protein
STRINGMLOC_7637.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-80scarecrow-like 3