PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000712G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 482aa    MW: 53851.8 Da    PI: 6.6012
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000712G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.19.2e-91394574374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshl 96 
                      +L ecA++v++g   ++++ L ++  l s ++ p+qRl + ++  L++rl+ ++++++ al +ps+  e  +s+  aa++ f ++ P+l  +++
  PH01000712G0640  39 VLQECATHVTEGCIWKTNRSLREITRLTSIADGPLQRLSTIIADSLSRRLVCHMEGIAGALiHPSDYFE--QSSIQAARCNFANLVPYLWSGFV 130
                      5889*****************************************************998855555553..4444457777************* PP

             GRAS  97 taNqaIleavege..ervHiiDfdisq..GlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      t N+aIlea+e e  + v iiD++ s   +  W  Ll+ +  Rp+g+p lR+T+v++    ++e l e++  L+k A++l++pf+f+  v  rl
  PH01000712G0640 131 TINRAILEAMEDEkvTVVRIIDLSCSTtlPWRWCKLLHDFHGRPGGAPDLRLTVVHD----NNEFLAEMQALLSKEADALKMPFHFDS-VIGRL 219
                      *************87889*****9886226689************************....99*************************.79999 PP

             GRAS 187 edleleeL....rvkpgEalaVnlvlqlhrll...........................................desvsleserdevLklvks 233
                      e+l++++L    ++k gEa+a++++lq+hrll                                           + + ++++   + L++++ 
  PH01000712G0640 220 ETLDFSNLrnslKIKFGEAIAISCALQMHRLLvvdddvswagiaqlqqmaniarlkqmsssvyspastlnypqtpSPQCQMPNLLVSCLSAIRA 313
                      9999988844335666********************************************************998778888889999******* PP

             GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eak..lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      l+P+++v++eq+a+hn+  F +rf eal+yy+alfdsl e+    pr ++er+ vEr+llg+ei+n+++ceg +r erhe+l++W + +ee+GF
  PH01000712G0640 314 LKPNIMVMMEQDANHNAFLFRDRFGEALKYYAALFDSLhEVAaaNPRRTDERVRVERMLLGEEIKNILMCEGVRRHERHERLSQWAMHMEESGF 407
                      **************************************65442145666********************************************* PP

             GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + vpls +a  + k +l  ++ +g + +e+ g+l+l+W + +L+s+SaWr
  PH01000712G0640 408 GHVPLSFSAIREGKEVLTSFGLKGCQNKEDGGCLLLCWGSTTLYSISAWR 457
                      *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.76610437IPR005202Transcription factor GRAS
PfamPF035143.2E-8839457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAISDYCTPI PNDNNISSSC ICFAIDQGTE DQLAQLGLVL QECATHVTEG CIWKTNRSLR  60
EITRLTSIAD GPLQRLSTII ADSLSRRLVC HMEGIAGALI HPSDYFEQSS IQAARCNFAN  120
LVPYLWSGFV TINRAILEAM EDEKVTVVRI IDLSCSTTLP WRWCKLLHDF HGRPGGAPDL  180
RLTVVHDNNE FLAEMQALLS KEADALKMPF HFDSVIGRLE TLDFSNLRNS LKIKFGEAIA  240
ISCALQMHRL LVVDDDVSWA GIAQLQQMAN IARLKQMSSS VYSPASTLNY PQTPSPQCQM  300
PNLLVSCLSA IRALKPNIMV MMEQDANHNA FLFRDRFGEA LKYYAALFDS LHEVAAANPR  360
RTDERVRVER MLLGEEIKNI LMCEGVRRHE RHERLSQWAM HMEESGFGHV PLSFSAIREG  420
KEVLTSFGLK GCQNKEDGGC LLLCWGSTTL YSISAWRPHK GSTSGSRELL SVQHQAIWPA  480
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-334245825380Protein SCARECROW
5b3h_A1e-334245824379Protein SCARECROW
5b3h_D1e-334245824379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000712G0640
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683876.10.0scarecrow-like protein 3
TrEMBLA0A0A9C2J40.0A0A0A9C2J4_ARUDO; Uncharacterized protein
STRINGPavir.J24605.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-85scarecrow-like 3