PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000687G0520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 632aa    MW: 67063 Da    PI: 4.8696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000687G0520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05520545123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C   +C ++F+++ +L +H ++ +
  PH01000687G0520 520 FECDidYCRMTFKTRAELFVHKKNmC 545
                      89*******************99866 PP
2zf-C2H214.10.00014603627123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ykC+   Cgk ++  s+++rH r++
  PH01000687G0520 603 YKCTtpGCGKIYKYVSDFTRHRRRC 627
                      99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035521520542IPR015880Zinc finger, C2H2-like
SMARTSM003553.3543567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.99E-6543580No hitNo description
PROSITE profilePS5015711.655543572IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4544567IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280545567IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-12568595IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0023573597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.422573602IPR007087Zinc finger, C2H2
PROSITE patternPS000280575597IPR007087Zinc finger, C2H2
SuperFamilySSF576677.96E-11583625No hitNo description
Gene3DG3DSA:3.30.160.601.1E-11596625IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035515603625IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099603631IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MRIRRYAARL LASSTSTAPS SPPPQPAASW FHAADDYCAF CELSRSAPQV APDAIKQKGH  60
IAGRVLEAEL KTDERIGLAQ RPPVPEAQGC KIDDEPPVSN AAARLEAARG ASGVSGAAAR  120
PEGTGGASLV SEAATEPAAT GGAFIVNEAT GEQEVRGATS LVDETVAEPE VTEGASLVNR  180
SITEPEVLRE TSPANESVTE PAVSGRFSLV SEAATEPAVI VTLPELTGGD EGAAEPEVSR  240
GASLVNESAI EMEVIRGASL VNEAATEAGH TEGVSLVSEA VTEPGVTGAA SLDNECAVEP  300
EVTGGASLVN GAAELEITRG AYIANKAAAE PEVIGGASAC CGDGDAALDE PRPPDCDVEI  360
VDMQVGNAGE AVVSTVQPSR DDAADVGSVN STSNGLVRAK SPTAEDVASH DGCIDTPSVS  420
CVSDIVARSI GKSGRTDIIC YARRRGKRKM EMEIKTEQFE MDDGVIYDQC EEKVTLERTG  480
PCESVMSTAG STEIKIADIK RELVDNSAAS KGKKMKIHRF ECDIDYCRMT FKTRAELFVH  540
KKNMCTVKSC SRHFRSHKYL RRHQSVHNDE MPYKCPWEGC SMAFKLTWAL AEHFQVHTGE  600
KPYKCTTPGC GKIYKYVSDF TRHRRRCKPQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-4052062623129Lysine-specific demethylase REF6
6a58_A3e-4052062623129Lysine-specific demethylase REF6
6a59_A3e-4052062623129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441449ARRRGKRKM
2442448RRRGKRK
3442449RRRGKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000687G0520
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0D3FDU70.0A0A0D3FDU7_9ORYZ; Uncharacterized protein
TrEMBLI1P7L00.0I1P7L0_ORYGL; Uncharacterized protein
STRINGORGLA03G0035600.10.0(Oryza glaberrima)
STRINGOBART03G03800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-39C2H2 family protein