PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000679G0760
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 424aa    MW: 44662 Da    PI: 6.7978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000679G0760genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.1e-053173541254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  PH01000679G0760 317 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 354
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-11315373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-5315358No hitNo description
Gene3DG3DSA:4.10.280.102.7E-8315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGDHQMMHAA PAMFNGCGGD GSASHGIWWN TAVPAAMCTT DLAGTFGTWS SALAASYDMA  60
ADGGKAKSTT TASSESPGNN SSITFQEPAS IPDPAGVAAV PQPALSGFTD WSYPFIGVSL  120
HGFLQDGHQD MISRTDQSHL NASSLMNPSS NNLALHGHHE QDHLQLLSNL GSEQLLSPTS  180
PYGFQSSLLR SLMEPTAKPA LPGFQQYQYQ QMGHSTVPAA RFGPAGAGVR EPLQFTNDAP  240
FWNPSAGFGM AAAAPDQDSV RAAKSSSAPR AASLAIKTAL EGVGDSSSII TKKANGEPAF  300
KKPRLETPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHETIEY IKFLHDQVGA  360
LSAPYLKNGH QVPHLKSSSP DKSKDGELSL KGRGLCLVPI SSTFAVASEV PVDFWTPFGA  420
NFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000679G0760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8327011e-156CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-51bHLH family protein