PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000664G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 306aa    MW: 32952.8 Da    PI: 5.6408
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000664G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.65.7e-383590661
           zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  PH01000664G0640 35 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 90
                     58***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-311989IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8543589IPR003851Zinc finger, Dof-type
PfamPF027015.8E-323589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLSSHYENML TYAAAGRRTV LVDHRRYRPN VELAPNCPRC DSPNTKFCYY NNYSLSQPRY  60
FCKGCRRYWT KGGSLRNVPV GGGCRKNRRG KSVRSMADTV AATRSSAAFS HRFNSPVRPD  120
LLLEGMVGNP ADLGQPASPD KPAAADGSTI DLALLYAKFL NHQPVVEQCA VVPESVDTLS  180
GSSDMSSRAQ PPVRSGPNHD AFGELCGLAS TEVGATMLQC ADASAQALEE LNFSVDQSCY  240
DSLGLPTDGG DLILPSTWDQ EAKYEPFDSL PEDNMSLQHN GVTGGDDVWS SALSCQGLEA  300
ALCRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000664G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654467.11e-155PREDICTED: uncharacterized protein LOC102700144
SwissprotQ9SVC55e-37DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A1D8F0J00.0A0A1D8F0J0_9POAL; Dof protein
STRINGOB05G25870.11e-154(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-39Dof family protein