PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000656G0710
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 569aa    MW: 64157 Da    PI: 6.406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000656G0710genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.67.9e-1301995672373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cAea+s++ + +  +l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al++++ +   s+e l+++k++++++P++kf++
  PH01000656G0710 199 KQLLTKCAEALSENRTIEFLKLVQEARGVVSINGEPIQRLGAYVLEGLVARHGNSGTNIYRALKCRKPE---SKELLSYMKILYNICPYFKFGY 289
                      689*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aI ea+ +e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+++ ee+++p+ef++l +   +
  PH01000656G0710 290 MAANGAIAEALRSEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGKMLKSMSEEFNIPLEFTPL-SVYAT 382
                      *******************************************************999999**************************6.77899 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+lpr+s+e
  PH01000656G0710 383 EVTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFVETMDYYSAMFESIDANLPRDSKE 476
                      999******************************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  PH01000656G0710 477 RISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWKNRKLISASAW 567
                      *************************************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.612172549IPR005202Transcription factor GRAS
PfamPF035142.7E-127199567IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDLHQLLKYR FTGANVIYEI PTENNLANSP WPLKFEFSNS PYTPLSSQLE CDNLSALSNT  60
PDNQSSTETI SAQPISPLEA DSSYRQAGIL LQENIQVGPD PLYATSRHNM QHALREIETV  120
LMAPDTDDAT TSTKHEFEEN KPTQLMRQRS RTWSHESRQP SPGVVRPQFA TGGYPTASYE  180
FRPEKRQREL REDPQIIVKQ LLTKCAEALS ENRTIEFLKL VQEARGVVSI NGEPIQRLGA  240
YVLEGLVARH GNSGTNIYRA LKCRKPESKE LLSYMKILYN ICPYFKFGYM AANGAIAEAL  300
RSEDKIHIID FQIAQGTQWI TLIQALAARP GGPPHVRITG IDDPVSEYAR GEGLEIVGKM  360
LKSMSEEFNI PLEFTPLSVY ATEVTKEMLE IRPGEALAVN FTLQLHHTPD ESVDVNNPRD  420
GLLRMVKGLS PKVTTLVEQE SHTNTTPFLM RFVETMDYYS AMFESIDANL PRDSKERISV  480
EQHCLAKDIV NIIACEGKDR VERHELLGKW KSRLTMAGFK PYPLSSYVNS VIKKLLACYS  540
DKYTLEEKDG AMLLGWKNRK LISASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-711825673378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000656G0710
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646796.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0E0LLW10.0A0A0E0LLW1_ORYPU; Uncharacterized protein
STRINGOPUNC07G16570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]