PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000656G0510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27072.7 Da PI: 5.0559 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 6.8e-11 | 88 | 135 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f+eL +l + + +K++K++iL A++ + +L PH01000656G0510 88 SKACREKLRRDKLNERFFELGAVLEPG---KTPKMDKSAILNDAIRVVAEL 135 6789**********************9...9**************988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-14 | 76 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-8 | 82 | 140 | No hit | No description |
PROSITE profile | PS50888 | 12.9 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 88 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-14 | 88 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-9 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00703 | 150 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MASPEGSTWV FDCPLMDDLA AADFAAPAGG FYWAPPVQTQ IQPPAQAVAA AADPDTCAEI 60 NSSVDCEHGK EQPTNKRPRS ESGAQPSSKA CREKLRRDKL NERFFELGAV LEPGKTPKMD 120 KSAILNDAIR VVAELRSEAQ KLKDSNESLQ EKIKELKAEK NELRDEKQKL KAEKESLEQQ 180 IKFLNARPSL VPHPSVIPAT AFTAAQGQAA GQKLMMPVIG YPGFPMWQFM PPSDVDTTDD 240 PKSCPPVA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000656G0510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP094352 | 0.0 | FP094352.1 Phyllostachys edulis cDNA clone: bphylf030a22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562971.1 | 1e-143 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 2e-79 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0E0I1Z2 | 1e-147 | A0A0E0I1Z2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q9I2 | 1e-147 | A0A0E0Q9I2_ORYRU; Uncharacterized protein | ||||
STRING | OPUNC07G16420.1 | 1e-145 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-68 | bHLH family protein |