PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000655G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 383aa    MW: 41410.6 Da    PI: 5.4585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000655G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000243313701054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  PH01000655G0140 331 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 370
                      9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.118321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-6331377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-6331378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00128331375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVWQAAAQTR FRVFKHENGI AVRVIACFQP LQNCQFFSNT IQVEGFPVHL NFLLVVLFGG  60
CLLMGEKANP WCHWPNPPWK FNIDSSACNP YPPDVGLDNT NSVTLPTCLN SDAYIYSGVA  120
APVPFFTASV TDRPLPMSTR FVTALATSVG LSAADPPQKR SLAIYENEKH TTLACPFLSK  180
GALDTVPELQ GSNETNLTAV GAQDTGDTHE NTEEIDALLD SDSDEGYEKA HEFKKARKSP  240
VENDTESVAS AGASAGAARL AKKRRLSSGT DRSVVDTASS ARPDHSIGQK CLGNNDDAQS  300
CCFGEVESDH KFALTLREGE DAEGDSPDDR KRRRERIQET VAALRKIVPG GIAKDATAVL  360
DEAICYLKYL KLKVKTLGAV SL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329333RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000655G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998630.0FP099863.1 Phyllostachys edulis cDNA clone: bphylf058c17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557777.11e-159transcription factor bHLH145
TrEMBLA0A0E0KEK80.0A0A0E0KEK8_ORYPU; Uncharacterized protein
STRINGOPUNC03G18920.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820