PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000645G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 393aa    MW: 42372.4 Da    PI: 9.1921
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000645G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+++++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  PH01000645G0040 115 AWSEEEHKRFLLGLNKLGKGDWRGISRNYVVSRTPTQVASHAQKY 159
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6972237IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.9E-42240IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129414.956108164IPR017930Myb domain
SMARTSM007177.9E-9112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-9114158IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-17114163IPR006447Myb domain, plants
CDDcd001672.22E-8115160No hitNo description
PfamPF002491.1E-10115159IPR001005SANT/Myb domain
SuperFamilySSF466897.8E-15115165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDGVLPPPPP LPPAGGAGDG PRRCSQCGHH GHNARTCTAR PVKLFGVRIG DKLIRKSASM  60
GNLAQLAEGS GGARDEGYGS EGNDDKRQRK RVFAQVFGFA FQFDLLIFKS YVGEAWSEEE  120
HKRFLLGLNK LGKGDWRGIS RNYVVSRTPT QVASHAQKYF IRQTNVHRRK RRSSLFDMVI  180
DDSADQPLSR TLSQEVEECL ADPQPVTAPE AQPAPVPVLT SVSVPPPVPV MAPPAPVPVL  240
TSAAPPPVPA MAPQPEEKEP VASSSNTGEA GIVMPEVLPH YGYPMMLPPP YYPSAFVPVP  300
YYGYVPFFYR PPSTVQASHE VVKPMAMHSK PPLNVEDLYS MSELSLKGDS NTNSVAPKLP  360
LPPKPIGRPE RQSAFHGKGP ADGSSNGLIP AK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490DKRQRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000645G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573373.11e-171transcription factor MYBS3
TrEMBLI1I0V81e-170I1I0V8_BRADI; Uncharacterized protein
STRINGBRADI3G14830.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-56MYB_related family protein