PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000639G0140
Common NameSCL6
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 390aa    MW: 41441.1 Da    PI: 5.5218
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000639G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.52e-47169388137374
             GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230
                       +ppsl++T+++s  s +  el+ t+e L++fA+elg+pfefn+++ + ++   +  L+  p+Ea+aV+l +   ++         + ++ L++
  PH01000639G0140 169 LPPPSLKVTALVSLGSRHPLELHLTHESLTRFAAELGIPFEFNAILFDPFSPSPPMGLSAAPDEAVAVHLPIGSGTFS--------PAPASLRI 254
                      589**********9999*******************************************************999997........55678*** PP

             GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      vk+l+P +vv+v++ +d+++ ++ ++ l+ l+ ++al++sl+a  ++  ++ +kvE+++++++++ +v   +         l  W++++ +aGF
  PH01000639G0140 255 VKQLRPAIVVCVDHGCDRGDLPLPHHALSLLRSCAALLESLDAA-GASLDAVTKVEQFVVRPRVERLVLGDK---------LPPWQSMFASAGF 338
                      *****************************************998.5666999****************8654.........67*********** PP

             GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +++ls+ a++qa++llr++ ++g++ve+++++l l W++ +LvsvSaWr
  PH01000639G0140 339 ATLQLSNAAEAQAECLLRRTTNHGFHVEKRQAALALWWQRSELVSVSAWR 388
                      *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.4081368IPR005202Transcription factor GRAS
PfamPF035146.7E-45169388IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSCDLHPKLE LELDLDHDGG AQGAVFAVAK RLNKSPEPTS VLYNRSPSPP TSSSLGGGAS  60
SYSAAGTAPE PPPISAEDWE AVLSGDMAAP AAQPQDSSFL RWIMDAGYAD GDGDAFGFKG  120
PAFDPFLPPP PHQEPAAVEA FSLPQLPPQL PAQPLPELAH QWRRTAAPLP PPSLKVTALV  180
SLGSRHPLEL HLTHESLTRF AAELGIPFEF NAILFDPFSP SPPMGLSAAP DEAVAVHLPI  240
GSGTFSPAPA SLRIVKQLRP AIVVCVDHGC DRGDLPLPHH ALSLLRSCAA LLESLDAAGA  300
SLDAVTKVEQ FVVRPRVERL VLGDKLPPWQ SMFASAGFAT LQLSNAAEAQ AECLLRRTTN  360
HGFHVEKRQA ALALWWQRSE LVSVSAWRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000639G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9092770.0JX909277.1 Phyllostachys edulis scarecrow-like 6 protein (SCL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693433.11e-133PREDICTED: scarecrow-like protein 6
TrEMBLA0A023HHE31e-159A0A023HHE3_9POAL; Scarecrow-like 6 protein
STRINGOPUNC06G00270.11e-131(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-49GRAS family protein