PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000618G0900
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 583aa    MW: 66355.8 Da    PI: 9.7114
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000618G0900genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.9e-11403443346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v+++G++ Wkt a+++g  +++ ++k+ w+ 
  PH01000618G0900 403 KWTQEEYEKIRRFVEKHGTD-WKTLAKELG--KSDIHVKDTWRR 443
                      8*******************.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.028327398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5328391IPR009057Homeodomain-like
PROSITE profilePS500905.122330396IPR017877Myb-like domain
PROSITE profilePS5129412.213398449IPR017930Myb domain
SMARTSM007172.8E-5400447IPR001005SANT/Myb domain
SuperFamilySSF466895.63E-10402462IPR009057Homeodomain-like
CDDcd001673.74E-5403445No hitNo description
Gene3DG3DSA:1.10.10.603.0E-11403462IPR009057Homeodomain-like
PfamPF139214.2E-11404462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDEVRAGREE RRRKKKEKRR EGKAKDELER CSGEEAMEID SAADTPENGD EKTVMGIEEE  60
KRGHKSQKEK GRGKEKKSKV NGSVGSCSRK HGVEKEQSKN SALMVENPCS EHVEGDTSKG  120
DLKKDKKTRK KKKGKEAETA GQKQTLDSTI ENVGSVHAER DRGEGRQSSK SKKSKQKREY  180
GEPVAEGSAG DQIVTSKDKK RKKDHSVVLE EGSQIDMTKM GEKREGKKKR RQESDKIGPD  240
LSQNASAGGE EADVDGKNDK KKKKGKERIA GGKREKEKAA RLKDMGRRVS FADDVVVFSI  300
DGGDDEECGR SGDDEECGRS DESKLVHGQR FTKEEDATLM EAIMNYAEMK QLGEKGREMI  360
RASSKHPELK GCWADIGKSL PHRPSKAIYK RARILLYRSD ERKWTQEEYE KIRRFVEKHG  420
TDWKTLAKEL GKSDIHVKDT WRRIKPKNLK KGAWTQDEYQ NLFDLVNLDL RVKAHQENDP  480
GHRVLKLVYP AYIFYVYMHM SSLDWFVTCN LCMGMAINSC HTFRYMQLAS PLVKQGIWAD  540
VDDYRLLEAV TTHNIRGKNE KPGFHSFFLP FLSDLHSCTR DH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11018RRRKKKEKR
21116RRKKKE
31217RKKKEK
41220RKKKEKRRE
5198202KKRKK
6226230KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000618G0900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227387.11e-167RNA polymerase I termination factor
TrEMBLI1GWF21e-166I1GWF2_BRADI; Uncharacterized protein
STRINGBRADI1G33410.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.19e-53MYB_related family protein