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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000616G0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | DBB | ||||||||
Protein Properties | Length: 212aa MW: 21867.2 Da PI: 4.7189 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.5 | 2e-06 | 5 | 45 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +++ e+ C ++ lC+ C + H+ H+v PH01000616G0330 5 CDACGQAEAAVLCCADEAALCRRCDAAVHSAnklagkhHRV 45 *****************************668899996655 PP | |||||||
2 | zf-B_box | 29 | 2.1e-09 | 70 | 109 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++C+ ++ek+ +fC +++ llC++C ++ H H PH01000616G0330 70 PVCDICQEKRGYFFCLEDRALLCRSCDVAVHTTspyvstH 109 68***************************99555666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.584 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.20E-6 | 5 | 47 | No hit | No description |
SMART | SM00336 | 2.7E-7 | 5 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.5E-13 | 67 | 114 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 5.8E-5 | 68 | 108 | No hit | No description |
CDD | cd00021 | 9.70E-9 | 70 | 114 | No hit | No description |
Pfam | PF00643 | 1.1E-7 | 70 | 110 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.371 | 71 | 114 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKIGCDACGQ AEAAVLCCAD EAALCRRCDA AVHSANKLAG KHHRVALLPS GGGLSPACSS 60 SPDADDGGHP VCDICQEKRG YFFCLEDRAL LCRSCDVAVH TTSPYVSTHR RFLITGVRIG 120 GAQDHIPGSD VSGTAGAVVS SSSSSGDGSN NLPSSSNLII PDNGRPSEAG LGEEEDIGRQ 180 QQWPWSDIFA DGVGMEQCYP GLSEPGSSSL TG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000616G0330 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091891 | 0.0 | FP091891.1 Phyllostachys edulis cDNA clone: bphylf050h06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167650.1 | 1e-88 | B-box zinc finger protein 22-like | ||||
Swissprot | Q9SYM2 | 2e-43 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | F2D3C6 | 1e-93 | F2D3C6_HORVV; Predicted protein | ||||
STRING | MLOC_55203.1 | 2e-94 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 7e-45 | light-regulated zinc finger protein 1 |