 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000606G0250 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 201aa MW: 23479.1 Da PI: 9.1564 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000606G0250 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 86.5 | 1.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k ienk+ rqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl ey++
PH01000606G0250 9 KLIENKIYRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTRGKLCEYAT 59
569**********************************************86 PP
|
| 2 | K-box | 103.9 | 2e-34 | 85 | 181 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
++ +s+e++++ +++ e++kLk+++e++q+ q++l+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i++l kkek+lqeen+ L+k
PH01000606G0250 85 EKVLVSAESETQGNWCDEYRKLKAKVETIQKCQKQLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSQLMLESISQLEKKEKSLQEENTVLQK 178
5666778899999********************************************************************************9 PP
K-box 97 kle 99
+l
PH01000606G0250 179 ELV 181
985 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 30.319 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.15E-34 | 2 | 84 | No hit | No description |
| SuperFamily | SSF55455 | 4.32E-30 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 8.5E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.3E-29 | 92 | 180 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 17.11 | 96 | 186 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MGRGKVQLKL IENKIYRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST RGKLCEYATD 60
SWCIFLLFHS MDKILERYER YSYAEKVLVS AESETQGNWC DEYRKLKAKV ETIQKCQKQL 120
MGEDLESLNL KELQQLEQQL ESSLKHIRSR KSQLMLESIS QLEKKEKSLQ EENTVLQKEL 180
VEKQVHKQQV QRDQTLPRPS *
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ197198 | 0.0 | FJ197198.1 Phyllostachys praecox truncated MADS box protein (MADS2) mRNA, complete cds. |
| Publications
? help Back to Top |
- Jia H, et al.
Characterization and transcriptional profiles of two rice MADS-box genes.
Plant Sci., 2000. 155(2): p. 115-122
[PMID:10814814] - Jang S,An K,Lee S,An G
Characterization of tobacco MADS-box genes involved in floral initiation.
Plant Cell Physiol., 2002. 43(2): p. 230-8
[PMID:11867703] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
Plant Physiol., 2007. 145(4): p. 1484-94
[PMID:17951465] - Li D, et al.
Functional characterization of rice OsDof12.
Planta, 2009. 229(6): p. 1159-69
[PMID:19198875] - Tanaka N, et al.
The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
Plant Cell, 2011. 23(6): p. 2143-54
[PMID:21705640] - Kobayashi K, et al.
Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
Plant Cell, 2012. 24(5): p. 1848-59
[PMID:22570445] - Wei X, et al.
Fine mapping of BH1, a gene controlling lemma and palea development in rice.
Plant Cell Rep., 2013. 32(9): p. 1455-63
[PMID:23689259] - Su L,Shan JX,Gao JP,Lin HX
OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
Mol Plant, 2016. 9(2): p. 233-244
[PMID:26537047] - Wu F, et al.
The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
Plant J., 2017. 89(2): p. 310-324
[PMID:27689766]
|
