PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000599G0590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 34786.1 Da PI: 6.846 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.1 | 1.8e-09 | 191 | 238 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PH01000599G0590 191 SHSLAERVRREKISERMKLLQDLVPGC----CKVTGKAVMLDEIINYVQSLQ 238 8*************************8....4559****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.11E-15 | 185 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.97E-11 | 185 | 242 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-15 | 187 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.478 | 187 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 191 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 193 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAHDGFLGSF HGLAWPFAHG AAPAPFDALQ LQRVVMGSAG AGWEHDSALS LLVSSPSSVA 60 AAATGGVHEA MLMDELASRL GGVCGGLGVP SPPSSRYASC YSTPVSSPSK SAPPVPALLA 120 ADTVLAERAA RLSCLPAAGS ERQEMQGVTG RRPPAAGEAG HGGNGKGKEA AAEPPKDYIH 180 VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCCKV TGKAVMLDEI INYVQSLQRQ 240 VEANQPTAPA PSSLPLPPPA YSLEGSSSAF CYASSQGTAM QSVVTNVKGF EMPSSFANHG 300 VPGSSLDGFQ SGNSQIGSLW EDDLHSVVQM GFRGNT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000599G0590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974573 | 2e-59 | EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798622.1 | 1e-105 | transcription factor BHLH089-like | ||||
TrEMBL | A0A270R3Z9 | 1e-103 | A0A270R3Z9_9POAL; Uncharacterized protein | ||||
STRING | Si026387m | 1e-98 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13313 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 6e-40 | bHLH family protein |