PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000595G0290

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 354aa MW: 38378 Da PI: 9.035

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000595G0290	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.8	1.5e-16	159	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq PH01000595G0290 159 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 205 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.98E-18	152	209	No hit	No description
SuperFamily	SSF47459	7.2E-21	153	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.866	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-14	159	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-20	159	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-17	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MNFTFFSKPL QRLPGCERAS AAATASNPVE STMVQTTTNR LRNTPLFSEQ RMAWLQPPKG 60 SRTTVAAAPP APLVPCRQGE TAATVTQRLP SEARAPEPVA AAATSLSVCS GNSDRSQLKR 120 SNYQAVEWSL SQDEDLDDEP DTLRRSAARS TKRSRVAEVH NLSERRRRDR INEKMRALQE 180 LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM MSMGTGLYVP PMLLPAAAMQ HLQMPPMAHF 240 PHLGTMGLGF GMGTFDMVPF PRVASTQFPC PMIPGAPMAM PPGSATVPMF GLPGQAMPSL 300 ASFPPAPGHM ANALQAEQML SEAATRGGAD TSDHSQFPIV PQGDQKQQRP KNT*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MNFTFFSKPL QRLPGCERAS AAATASNPVE STMVQTTTNR LRNTPLFSEQ RMAWLQPPKG  60
SRTTVAAAPP APLVPCRQGE TAATVTQRLP SEARAPEPVA AAATSLSVCS GNSDRSQLKR  120
SNYQAVEWSL SQDEDLDDEP DTLRRSAARS TKRSRVAEVH NLSERRRRDR INEKMRALQE  180
LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM MSMGTGLYVP PMLLPAAAMQ HLQMPPMAHF  240
PHLGTMGLGF GMGTFDMVPF PRVASTQFPC PMIPGAPMAM PPGSATVPMF GLPGQAMPSL  300
ASFPPAPGHM ANALQAEQML SEAATRGGAD TSDHSQFPIV PQGDQKQQRP KNT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	168	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000595G0290

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662938.1	1e-109	transcription factor APG isoform X2
Swissprot	Q0JNI9	1e-94	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A0A9J5P6	1e-119	A0A0A9J5P6_ARUDO; Uncharacterized protein
STRING	GRMZM2G062541_P01	1e-108	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	9e-35	phytochrome interacting factor 3

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]