PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000574G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 1009aa    MW: 113096 Da    PI: 8.1852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000574G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019889912122
                      EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                      ++C    C++sFs++ +L  H r 
  PH01000574G0290 889 FSCDieGCDMSFSTQKDLSLHKRD 912
                      899999***************985 PP
2zf-C2H210.70.0016972998123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                      ykC+   C+++F+  s++ rH r+  H
  PH01000574G0290 972 YKCNepGCSQTFRFVSDFSRHKRKtgH 998
                      99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-4881911IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035510889911IPR015880Zinc finger, C2H2-like
SMARTSM0035515912936IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97912941IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-4914940IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280914936IPR007087Zinc finger, C2H2
SuperFamilySSF576678.75E-15923979No hitNo description
Gene3DG3DSA:3.30.160.601.4E-10941966IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0018942966IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427942971IPR007087Zinc finger, C2H2
PROSITE patternPS000280944966IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-9967995IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.729721003IPR007087Zinc finger, C2H2
SMARTSM003550.24972998IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280974998IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MVSHYQLLYK LALSLRPREP KNFHTMPRSS RLRDKKKNEG DIMVKKKFVG SVTENNNLLS  60
ILLDKGSCII VPEIAFPLPS FPMTMEPEVT FKQRLTAGPC SISQQAAGDM PVDVTVDKIT  120
GIEDMSGSQS ASETSFSACN GRKLYETKYG KIDTAAFCLS MSEMQSGVID KDRSHQGGGL  180
LDQGRLPCVQ CGMLSFACVA IIQPREAAVQ FIMSRECISS SAKHGEISKS QISNWITKNC  240
EMVPQQGQAS GTDDNVIRSI SLAQVSDRCR QLYRSDTNGC TSALGLLASA YESSDSEEEI  300
ADIVLTDSEK NDAANQGTNT RFLGTSVSCS STVHCQKTNL HLYEEECEAR TTSLMKSIEH  360
NSRPITQCSR DTDISHFTGL GEPGTSYEQC PVYLDSVDDL TKSGVKVSSD TCVSTAKASF  420
EPDVLTMLKY NKDSCRMHVF CLEHGLETWT QLQQIGGANI MLLCHPEYPR AESAAKIIAE  480
ELGMKHDWKD ITFEEATEED IGTIQLALQD EDAEPTSFDW TVKMGINIYY SAKQSKSPLY  540
SKQIPYNSII YKAFGQESPD NLTDYVGQRS GTTKKKVAGW WCGKVWMSNQ VHPLLARKHE  600
EQNHDVVYSK AIFSANSHDK MQDEPSMRYT TLINRSPSKR ISGRKRGDSI EKSRAKKKRC  660
TASDEATLHC SGLGMNSEAI YDQPGNFDDH DKHEDGDEIE EAPSTQQYQQ HKLQNMNKKS  720
SSKERKDDKS NKKFHELYDE DNDVDVNIDS GDGGRWDNSP QRGLDAVKVK SGGKLQGSKR  780
KSSKGKASDD SSNGDKKLQK MNKKSSSKKQ KNIKLNRQFG EDLNEDNTVD YLLNAESVDD  840
TTLDNWDTIP EEKTVDVKVK SRGKMQSSKR KTSKQASDGL RTGDKKPKFS CDIEGCDMSF  900
STQKDLSLHK RDICPVKGCK KKFFCHKYLL QHRKVHMDER PLKCAWKGCK KTFKWPWART  960
EHMRVHTGVR PYKCNEPGCS QTFRFVSDFS RHKRKTGHSC DKRKKSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-56889100523139Lysine-specific demethylase REF6
6a58_A4e-56889100523139Lysine-specific demethylase REF6
6a59_A4e-56889100523139Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1643658RKRGDSIEKSRAKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000574G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
TrEMBLA0A0E0FBA70.0A0A0E0FBA7_9ORYZ; Uncharacterized protein
STRINGOMERI12G06090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-57relative of early flowering 6