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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000527G0320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 28152.5 Da PI: 6.0917 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 27 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++++E++++v +++ lG++ W+ Ia++++ gRt++++k++w++ PH01000527G0320 27 RSSFSQQEEDIIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 71 678*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.275 | 1 | 21 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 7 | 20 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.98E-21 | 8 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 21 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.134 | 22 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-14 | 26 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 27 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.09E-11 | 29 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRAPGLQRCG KSCRLRWINY LRPDLKRSSF SQQEEDIIVG LHEILGNRWS QIASHLPGRT 60 DNEIKNFWNS CLKRKLRQRG IDPSTHKPIS SAAAVALDPA SKDQKPPAAI AADSFALKQQ 120 QVFDPFPVTD GFGGGFDATA MALYGHLGGK DAAGFVDYSS VLDVSENLRY GESSSNSSNW 180 KCALGAPEVN NVLEAGEALH WASESKVEPL VGYGGEGEAL EHKFVLPCHG QQEQSMPHFD 240 FDVGRGAVVG EFNLEYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-23 | 8 | 76 | 40 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | LKRKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000527G0320 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111782 | 0.0 | AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644576.1 | 1e-152 | PREDICTED: myb-related protein Hv33-like | ||||
Swissprot | P20027 | 4e-75 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | J3L3A0 | 1e-151 | J3L3A0_ORYBR; Uncharacterized protein | ||||
STRING | OB01G37060.1 | 1e-152 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 7e-49 | myb domain protein 86 |