PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000513G0530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRF | ||||||||
Protein Properties | Length: 402aa MW: 43195.8 Da PI: 8.2234 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.2 | 6.1e-23 | 308 | 348 | 1 | 41 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 ++epgrCrRtDGKkWRC r+v++++k+CErH+hrgr+r + PH01000513G0530 308 EPEPGRCRRTDGKKWRCHRNVIPNEKYCERHMHRGRKRPVQ 348 69***********************************9876 PP | |||||||
2 | QLQ | 47.6 | 5e-17 | 242 | 277 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aF+ +Qlq+L+ Q l+++y+aa+ PvP +L+++i+k PH01000513G0530 242 AFNMMQLQELEEQSLVFQYMAARIPVPTHLVFPIWK 277 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.9E-7 | 241 | 277 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.914 | 242 | 277 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-10 | 242 | 276 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.724 | 308 | 352 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.0E-19 | 309 | 346 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MVNLDTLVHH VDLAAEKINV VAYSEGPLDL ILGPHDPCDT EHVMAAEAEN LLATTDMEQV 60 MAAEAQNLFA IEKTEEQTSK GPDVPILRRS SRLVERSGGR YENVVRKAME RKAHCRNDVE 120 LLSALLGRSC SRSENPRSRL GRGGEERNGG KYDNVVRKAL VSKAHCRDAR DLARGVSRVG 180 GIFGPPAMEG SGLAAASRGA EAAGGNTPAA SSGTVPGVAP TTEVQEEMGT LVASIPVGAG 240 AAFNMMQLQE LEEQSLVFQY MAARIPVPTH LVFPIWKSVT GASSEGAQKY PTLMGLATHC 300 LDFGKNPEPE PGRCRRTDGK KWRCHRNVIP NEKYCERHMH RGRKRPVQLA VKDDELDSAS 360 WSKSASGKAT FKATEGGKKT DDKSSSSKKL AVEASAAVQS T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000513G0530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-29 | growth-regulating factor 5 |