PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000490G0600
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 445aa    MW: 47803.6 Da    PI: 6.924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000490G0600genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015103121321
                      ETTTTEEESSHHHHHHHHH CS
          zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                      C  Cgk +s++ +L  H+r
  PH01000490G0600 103 CRECGKLYSSWRSLFGHMR 121
                      ******************8 PP
2zf-C2H216.13.1e-05301323123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp Cgk+Fs+   L  H  +H
  PH01000490G0600 301 YECPGCGKVFSSYQALGGHRASH 323
                      99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-51236No hitNo description
PROSITE profilePS5015710.2841340IPR007087Zinc finger, C2H2
PfamPF139122.3E-61335IPR007087Zinc finger, C2H2
SMARTSM003550.131335IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-41335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39101128IPR007087Zinc finger, C2H2
SMARTSM003550.28101123IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.19E-8102123No hitNo description
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
PfamPF139126.4E-4103123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4296324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-8296323No hitNo description
PfamPF139121.2E-11300325IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.616301328IPR007087Zinc finger, C2H2
SMARTSM003550.031301323IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280303323IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723382409IPR007087Zinc finger, C2H2
PfamPF139122.9E-10382404IPR007087Zinc finger, C2H2
SMARTSM003550.2382404IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280384404IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDAVEEIAAA AMHRCKVCGK GFQCGRSLGG HMRSHISLGE AVAEVNADDE LKRVSVNGGR  60
SSNGVVGYGL RENPKKTRRL SDFADEEEEE EEDGDGGGEH KACRECGKLY SSWRSLFGHM  120
RCHASGARDH EDVDVDEEFF AEEAEAEEEE MVAPMEPPVP AVVTAMAAPP RRRRRSMRVA  180
APAPAPPPVL SRFEKEKEDV ALCLLMLSRD TGLWTSPVKK ESLEKEERKK TTVKQVYLPR  240
NGYAYNSDDD SALLQYGDAK IKNGGGIDVG KSKKRRTSYY TPNSSSPKKQ CEVVPTKRTR  300
YECPGCGKVF SSYQALGGHR ASHKRINTSC TAPKVAPAPA PAPEPSVETY TSLSTLSPSA  360
SPDSVAASIG AKKSAAAAVE KFECPVCFRV FASGQALGGH KRSHVMTAAR SDAGGNGNAE  420
VEQHSVAVAG FLDLNFPPAP SEEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000490G0600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038404e-43AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039154e-43AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149634e-43AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126154e-43CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361334e-43CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308538.11e-166zinc finger protein 865
TrEMBLA0A1B6QFD61e-164A0A1B6QFD6_SORBI; Uncharacterized protein
STRINGTraes_2BS_ACA52BC08.11e-164(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-19C2H2-like zinc finger protein