 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000489G0740 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
C2H2 |
| Protein Properties |
Length: 151aa MW: 16276.5 Da PI: 11.3316 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000489G0740 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.3 | 0.00051 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cg++F + L H +H
PH01000489G0740 42 FQCRTCGRRFATFQALGGHRTSH 64
89**********99998888777 PP
|
| 2 | zf-C2H2 | 14.2 | 0.00013 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cgk F + L H+r+H
PH01000489G0740 91 HRCDTCGKEFLTGQALGGHMRRH 113
79********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 151 aa
Download sequence Send
to blast |
MEVATGARAS PASLLLLLSL SLSSASRMIA KNSKRVQLDG TFQCRTCGRR FATFQALGGH 60
RTSHKRPRVR ADGLELLLGA RPGKGIARPV HRCDTCGKEF LTGQALGGHM RRHRPARAAA 120
RTWAETTSSG LSEQHDDDEN DAPSTLIQFI *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC134045 | 8e-42 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. |
| GenBank | AK062491 | 8e-42 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. |
| GenBank | AK105226 | 8e-42 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. |
| GenBank | AP014967 | 8e-42 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | AY305866 | 8e-42 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. |
| GenBank | CP012619 | 8e-42 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
| GenBank | CT833322 | 8e-42 | CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence. |
